Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10406 ATGTGCCCCCTCCCCTTACCTTCTTCTCTTTTTTTTCCCTTTCCCATTCTTTTTCTTTATCAATTAATAACGTCCCAATCTGTACCATTCCATGACCAGAAGATGGTGCTGAGTACTTGGTGGAACAACTTTTCAAGAAATGGGCTGTGGGATTTGCCATTGGAAATGAAGGAGAGGCAACGTTGGACAGCTGAAGAGGATGCTTTATTACGTTCTTATGTCAAACAATATGGTCCTAGGGAATGGAATCTCGTGTCCCAGCGCATGAACACACCTCTTAACAGGGATGCAAAGTCATGCTTAGAAAGATGGAAGAACTACCTCAAACCTGGCATTAAGAAAGGATCTCTTAGTAAAGAAGAGCAGCGTCTTGTTATCCGCCTTCAAGCAAAATACGGAAACAAATGGAAGAAAATTGCTGCTGAAGTCCCCGGTCGCACTGCTAAGAGGTTAGGCAAGTGGTGGGAAGTGTTCAAAGAGAAGCAGCAGAGAGAAAAAAGGGACATCAATAGGATTGCTGACCCAATTAATGATAGCAAGTACGAGCACATACTAGAGAGTTTTGCAGAGAAACTAGTGAAGGAACGCCCTTTACCATCATTTGTTATGGCTGCTTCCAATGGGGCATTTCTGCATACCAATACTGCTGCACCAGCCCCTGCATCAGCTTTACTTCCTTCTTGGCTTTCCAATTCTAATAGTGCTACACCTGTTCCACCAAGTTCCATTTCTGTGACCCTAAGTCTTTCTCCTTCAACAGTGGCAGCACCTCCATTTTCATGGTTGCAACCTGAGAGAGGCACAGAGAATCCTCCTTTTGTTTTAGGGAATGTACCACCACATCACGGATCTGTTCCAACTTTTAGTGATAACATGCTCATATCTGAATTGGTGGAGTGCTGTAAAGAGTTGGAAGAGGGGCATCATGCTTGTGCAGCACATAAGAAGGAGGCAGTGTGGAGGTTAAGTAGGGTGGAGTTGCAGCTGGAGTCAGAGAAGACATGTCGAAGAAGGAAGACAATGGAAGAATTTGAAGCAAAGATTAAAGCTCTTCAGGAAGAGCAGAAAGCTGCTTTGTGTAGAATTGAAGAAGAATACAAGGAACAGTTAGCTGAATTGAGGAGAGATGCTGAAGCCAAGGAGCAAAAGTTGGCAGAGCAATGGGCTGCAAAGCATTCAAAGCTGACTAGATTACTAGAGCAAATAGGATGTAGACCAGGGCTCCCTGAGCCAAATGCAAGGTAA 1245 0.4426 MCPLPLPSSLFFPFPILFLYQLITSQSVPFHDQKMVLSTWWNNFSRNGLWDLPLEMKERQRWTAEEDALLRSYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLSKEEQRLVIRLQAKYGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREKRDINRIADPINDSKYEHILESFAEKLVKERPLPSFVMAASNGAFLHTNTAAPAPASALLPSWLSNSNSATPVPPSSISVTLSLSPSTVAAPPFSWLQPERGTENPPFVLGNVPPHHGSVPTFSDNMLISELVECCKELEEGHHACAAHKKEAVWRLSRVELQLESEKTCRRRKTMEEFEAKIKALQEEQKAALCRIEEEYKEQLAELRRDAEAKEQKLAEQWAAKHSKLTRLLEQIGCRPGLPEPNAR. 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10406 414 Coils Coil 341 387 - -
Seca3g10406 414 Pfam Myb-like DNA-binding domain 62 123 - -
Seca3g10406 414 ProSiteProfiles Myb-like domain profile. 109 159 IPR001005 -
Seca3g10406 414 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 109 163 IPR017930 -
Seca3g10406 414 Gene3D - 59 113 - -
Seca3g10406 414 ProSiteProfiles Myb-like domain profile. 54 108 IPR001005 -
Seca3g10406 414 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 56 407 - -
Seca3g10406 414 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Seca3g10406 414 CDD SANT 61 108 IPR001005 -
Seca3g10406 414 SMART sant 113 161 IPR001005 -
Seca3g10406 414 SMART sant 58 110 IPR001005 -
Seca3g10406 414 FunFam MYB-related transcription factor 59 113 - -
Seca3g10406 414 SUPERFAMILY Homeodomain-like 59 153 IPR009057 -
Seca3g10406 414 CDD SANT 118 159 IPR001005 -
Seca3g10406 414 Gene3D - 117 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10406 Seca-Chr3 248997907 249001503 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10406 56 409 MYB Transcription Factor Family AT2G37630 64.420 3.39e-154 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca3g10406 Myb_DNA-bind_6 2.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10406 K09422 - gmx:100101908 567