Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10405 ATGAAGGAGAGGCAACGTTGGAAAGCTGAAGAGGACGCTTTATTATGTGCTTATGTCAAACAATATGGTCCTAGAGAATGGAATCTTGTGTCCCAGCGCATGAACACACCTCTTAACAGGGATGCAAAGTCATGCTTAGAAAGGTGGAAGAACTACCTCAAGCCAGGCATCAAGAAAGGATCTCTCACTGAAGAAGAGCAACACCTTGTCATCCGCCTCCAAGCAAAACACGGCAACAAGTGGAAGAAAATCGCTGCTGAAGTCCCAGGCCGCACTGCTAAGAGGCTAGGCAAGTGGTGGGAAGTGTTCAAAGAGAAGCAATTGAGAGAAAAACAAGAGATTAACAAAACAATTGGTCCTGTTGATGACAGCAAATACGATCACATACTAGAGACTTTTGCAGAGAAACTAGTGAAAGAGCACCCTTCACCATCATATCTAATGGCTGCTTCTAATGGACCCTTTCTTCACACTGATGCACCAGCCACTGCATCAACTTTGCTTCCTCCTTGGCTTTCAAATTCTAATAACAATCCAGCTGCAGTCGCGCTGCCTTCCCCTTCAGTGACACTAAGCCTCTCTCCCTCAACAGTGACAGCACCTTCTCCATGGAGAGGACAAGAGAATGCAGCTCCTCTTGTTTTGGGGAATGTAATGCCTCATGGATCTGTTCAAGCTTTCGGCGACAATGTGCTCATGTCTGAGTTAGTGGAGTCCTGTAAAGAGTTGGAAGAAGTGCATCGCGCTTGGACTGCACATAAGAAAGAGGCAGCTTGGAGGCTAAGGAGGGTGGAGTTGCAGTTGGAGTCAGAGAAGGCCAATCGAAGGAGGGAGAAGATAGAAGAAATTGAAGCAAAGATTAAAGCTCTAAGGGAAGAACAGAATGTTGCTTTGGATAGAATTGAAGCAGACTATAGGGAACAGTTAGGTGGATTGAGGAGAGATGCAGAAACCAAAGAACAGAAGTTAACTGAGCAATGGACTGCAAAACATTTGCGCCTTGTGAAGTTTATGGAGCAGATAGGATGCAGAGCACGGCTTGGTGAGCCTAATGGAAGATAA 1062 0.4576 MKERQRWKAEEDALLCAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQHLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQLREKQEINKTIGPVDDSKYDHILETFAEKLVKEHPSPSYLMAASNGPFLHTDAPATASTLLPPWLSNSNNNPAAVALPSPSVTLSLSPSTVTAPSPWRGQENAAPLVLGNVMPHGSVQAFGDNVLMSELVESCKELEEVHRAWTAHKKEAAWRLRRVELQLESEKANRRREKIEEIEAKIKALREEQNVALDRIEADYREQLGGLRRDAETKEQKLTEQWTAKHLRLVKFMEQIGCRARLGEPNGR. 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10405 353 FunFam MYB-related transcription factor 4 58 - -
Seca3g10405 353 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Seca3g10405 353 SMART sant 3 55 IPR001005 -
Seca3g10405 353 SMART sant 58 106 IPR001005 -
Seca3g10405 353 CDD SANT 6 53 IPR001005 -
Seca3g10405 353 Gene3D - 62 120 - -
Seca3g10405 353 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Seca3g10405 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Seca3g10405 353 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 347 - -
Seca3g10405 353 Coils Coil 254 300 - -
Seca3g10405 353 CDD SANT 63 104 IPR001005 -
Seca3g10405 353 Pfam Myb-like DNA-binding domain 7 68 - -
Seca3g10405 353 Gene3D - 4 58 - -
Seca3g10405 353 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Seca3g10405 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10405 Seca-Chr3 248989498 248990559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10405 1 344 MYB Transcription Factor Family AT2G37630 65.847 6.61e-161 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca3g10405 Myb_DNA-bind_6 5.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10405 K09422 - gmx:100819082 537.339