Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10399 ATGGTGGAAGATAAGTTAACACATAAAAGGAAACACAGATCTGGTGCTTCCAATCATTTTTGCAAGCATTTTGTTGATGCCTTGGATACAATCAAGATGAACAAGAACAAGAACAAGGACTTACTATTAACATTTATGCAAGATCCAGTCTCTCCTTTGGTCAATCACTTCCATAAACAACAGGTGTATAGCACAAAAATGAGATTGACCAGGTCTGTATCATTTCCTTTATCTGACTCATTATCAAAAAGAAGAGGTTTTGGGGCTATAGGCAATGGTTATCTTCAAAAAGGGAAAGGAAAGTCATGTTTTGGAAATAAAACACAAAAATCAGTTCAATTTGAATCCTCAAAAAATTTATGTGAAGAGGCCATGCCATCAGTAGCAAAATGGAGAGAAAATGGAAATTTCAATATAAATGAAGCAATAGTAAGAGATGTCAATCCTTCTTCAGGATCTGCTCAAGGTCAGAACCAGAAAGAAAGCAAACATGCTAAGAATCTCAAACAGAAAATAGATCATGTAACTGGAGAGAGCAGAAAAGAAAAGCTTCGTGTTACAATGGATGCTGTCATTCATAAACTCCCCCAAGGCCATGGGATATCATATGACTTGAAGAAGGAAATTTTTAAGAAAATGACTGAACCTAATGTTACTAGAGAAGGTGAATACTGTTCTCCCAGTTGTAATGATAGTGATCTCTCTACTTATTCCTTTCCCAAGGATCACAAGCACAGCATAAGAAGAAACTGGTCCCTTCAAGATTCACTAGAAAGTTATTGTCAACTCCATGAGAATAGCTTTAACACAGAAGCTAGTAACCCTCAATCTGAGCAACTAAAACTAAGAACAGAAAAAGCATGTTCACCATTGAGGAAGCAGATACCCTTTCAAAGGATTCTTTCATTACCTGATCTCCAATCTTTTACCTATGCTTATCAGATTGGGGAGATTTCTGATATTTTATCTCTCACTGAGCCAATCAAGGCTTCTAAGGATGGAACTATGAGTTCTGAGAGTATTGGTTATCAGAAAAAGAAGCTTGGCCTTAATGTGCAATCAAAAAGTCCATTGCAGTTAGATACAATTCTGGAAAATTTGAATCAAGAGAACCATGTTAGTGTAGGTGAAAATGATTTAGTGACTGGTGCTAATATTGTGGGATCAGGATCAGATTGTAGCAGTGAAATTAATGACAAGGTGAGCATGGTAATTGATGATTTTGGACACAGTAGTTTAAAAAACGATGGCACTTCCAATGACCAAGATATTGGGATTGGACCAATAAAAGAATACAAGGCTGCAATAGCTGCATCAGATTCAAAATCTAAGCCAGAATCTATTGATAGAGTGGATAATGTGGCTGAGCAACAAGAGGCTAATATGGATTCCCTAGTGGCTGAGACCACAGAGAGTGCTCAAAAAGTGGAGATTCTAACCAAGCAATTGAATTATGAGATTCCTCATTTTCATGTGGACACCAGAGACAAAGCTGATTTCAATTATGTGAAATATGTACTTGAAATATCTGGACTGACTGGTAATGATTGCCTTTCAGCATGGCATTCTAGTGACCAACCAATTGATCCATTACTTTATGAAGAAATGGAAGGTGATCCTGATTTCTGTACTTATGAAGCTGGTCAGTGTAATCACCATGTATTGTTTGATTTAATTAATGAGACATTGTTGGAAATTTATGGGAAGTCTTACTGCTACCTTCCCATACAATTGTCATATCTTCCCCACATTCATCCAATGTCAGTAGGGTGTCACATTCTCCATCAAGTGTGGACTCATATGAGCAAGTGCATGAGATCCAAACCTGGCCAAACAATAGATGATCATGTAAATAGAGATCTAACAAAGCATGGTGAGTGGGTGAACCTTCAATTATGTGCTGAGTGTGTAGGTTTGGAGCTGGAAGACTTGATTTTCCATGATCTCCTAGAGGAAATAATGTGGGACTTAGCTAGCTTGTGA 1983 0.3742 MVEDKLTHKRKHRSGASNHFCKHFVDALDTIKMNKNKNKDLLLTFMQDPVSPLVNHFHKQQVYSTKMRLTRSVSFPLSDSLSKRRGFGAIGNGYLQKGKGKSCFGNKTQKSVQFESSKNLCEEAMPSVAKWRENGNFNINEAIVRDVNPSSGSAQGQNQKESKHAKNLKQKIDHVTGESRKEKLRVTMDAVIHKLPQGHGISYDLKKEIFKKMTEPNVTREGEYCSPSCNDSDLSTYSFPKDHKHSIRRNWSLQDSLESYCQLHENSFNTEASNPQSEQLKLRTEKACSPLRKQIPFQRILSLPDLQSFTYAYQIGEISDILSLTEPIKASKDGTMSSESIGYQKKKLGLNVQSKSPLQLDTILENLNQENHVSVGENDLVTGANIVGSGSDCSSEINDKVSMVIDDFGHSSLKNDGTSNDQDIGIGPIKEYKAAIAASDSKSKPESIDRVDNVAEQQEANMDSLVAETTESAQKVEILTKQLNYEIPHFHVDTRDKADFNYVKYVLEISGLTGNDCLSAWHSSDQPIDPLLYEEMEGDPDFCTYEAGQCNHHVLFDLINETLLEIYGKSYCYLPIQLSYLPHIHPMSVGCHILHQVWTHMSKCMRSKPGQTIDDHVNRDLTKHGEWVNLQLCAECVGLELEDLIFHDLLEEIMWDLASL. 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10399 660 Coils Coil 448 468 - -
Seca3g10399 660 MobiDBLite consensus disorder prediction 147 161 - -
Seca3g10399 660 MobiDBLite consensus disorder prediction 147 170 - -
Seca3g10399 660 PANTHER PROTEIN TRM32 3 657 IPR044257 -
Seca3g10399 660 Pfam Domain of unknown function (DUF4378) 499 652 IPR025486 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10399 Seca-Chr3 248806595 248812184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10399 22 646 TRM (TON1 Recruiting Motif) Superfamily AT5G02390 31.327 1.07e-72 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10399 - - gmx:121174644 758.829