Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10378 ATGGCTTCAAACTCCATGGATGGAGGACCAACACAGCTCACAGATGATTATGATGCCTTGATTTCAACCACTGACGTTGAGCTTCTCAAGCGAGCTTGGCGTAACGAGAAGGCAGCCCCTGAGATTCTTCGCTTTGAAACTGATTTGATCACCCGCGTCAGAGAACAGATTCAATTGATGGAAGAAACTGTGGAGGAGAAATCTGCTGGTGGTACTAACCCTCTTTCAGTATCCCTGTATCAGATGGACTTGGATAGAACCCTGTTTCTATTAAGATCATATCTTCGCATCCGCATTCAGAAGATTGAAAAGTACATGTTCCACATCCAAAAAACTGAAGAACTTTGGAACAGGCTATCTAGGGACGAGAAGAATTTCACTAGAAGGAAAGGCTATTCTTTGCATTTTTTTCTGACTACAAATGTGTTTTAA 432 0.4213 MASNSMDGGPTQLTDDYDALISTTDVELLKRAWRNEKAAPEILRFETDLITRVREQIQLMEETVEEKSAGGTNPLSVSLYQMDLDRTLFLLRSYLRIRIQKIEKYMFHIQKTEELWNRLSRDEKNFTRRKGYSLHFFLTTNVF. 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10378 143 Gene3D - 12 143 - -
Seca3g10378 143 PANTHER SLD5 PROTEIN 11 130 IPR008591 GO:0006261
Seca3g10378 143 PIRSF GINS_Sld5 1 140 IPR008591 GO:0006261
Seca3g10378 143 Pfam GINS complex protein 53 123 IPR021151 -
Seca3g10378 143 CDD GINS_A_Sld5 25 129 IPR038749 -
Seca3g10378 143 SUPERFAMILY GINS helical bundle-like 22 133 IPR036224 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10378 Seca-Chr3 248557107 248564793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10378 1 136 Core DNA Replication Machinery Family AT5G49010 60.145 8.88e-51 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10378 K10735 - gmx:100814216 204.142