Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10364 ATGGAGAAGAATAACGCATTCAAAGATGAAAACCTTCTTCAAAACGAACATCAAGAAGTCTTTGAATCCTTTGTTTGCTGTGTCTGCCTGGATCTGTTATACAAGCCCATTGTGCTATCTTGCGGTCACATATCCTGCTTCTGGTGTGTCCATAAATCAATGAATGGTTTGCGCGAATCTCATTGTCCAATTTGTAGACATCCATACTATCACTTTCCAACAATCTGTCAAATGCTTCACTTTTTGCTTCTGAAGATCTATCCTCTTGCTTACAAGAGAAGGGAAAAGCAGATACTAGAGGAAGAAGAGAAAACAGGACTTTTCTCCCCTCAATTTGATGCTTATATGTATGGATCACAAGTTATATTTGATCATTCTGGGAGCTCTCCTTCCTGCACTATTACAAATCCGGTGTCCAACTCTTGCAGCGTAGAATCTTTTGAATGTACGGAGCAATCAGGATCTGCGACTCATATAGGAGATGAAGGCACCATCAATTGTGAGCACACTTCAGACAGAATACCTGAAGTTATTGGGACTCCTTCTGTTGAAGGAAAAACGTTAATTCAGAATGAGCACAATCAACAACCGAAATTATTAGTTACAGATTTAATGTGTACAATGTGCAAGCAACTTCTCTTCCATCCCGTTGTTCTCAATTGTGGTCATGTATACTGTGAGTCTTGTATCATCGACTTACCTGATGAGATGCTTAGATGTCAAGTTTGTCAAAGTCCACATCCCACAGGATTTCCAAAAGTTTGTTTAGCTCTTGATCACTTTTTAGAGGAGCAATTTCCACAAGAGTATGCACGGCGGAGGGATTCAATTCAACTTAGCCAAATTAAAGTTAAACCTGAGGCCACATCTTTTGTGCTTCTACTTTCAGGTTCGTTGGGAGAAACGATAGCATGGTGGTCTGATCCTGGATTGGCGATTCATGTAGGAGTTGGTTGTGATTTTTGTGGGATGTACCCAATAACTGGGGATAGGTATAGATGTGTTGAGTGTAAGGAGAAGATTGGTTTTGATCTTTGTAGTGATTGCTATAAGACCCGCTCAAAGCTTCCAGGCCGATTTAATCAGCAGCACACCCCTGAACACAAGTTCAGGCTTGAACAAAGTTATGGGACGTTTAGGGGACAGTTGAATGGACAAGGGTCTTCGCTTGATTTAGTAATTATAGCCGATGATCCTGTTTCACCTGATGATGGAGAAGATAACCAGAGCAACTCCGAAGCCACCAACTGA 1251 0.4117 MEKNNAFKDENLLQNEHQEVFESFVCCVCLDLLYKPIVLSCGHISCFWCVHKSMNGLRESHCPICRHPYYHFPTICQMLHFLLLKIYPLAYKRREKQILEEEEKTGLFSPQFDAYMYGSQVIFDHSGSSPSCTITNPVSNSCSVESFECTEQSGSATHIGDEGTINCEHTSDRIPEVIGTPSVEGKTLIQNEHNQQPKLLVTDLMCTMCKQLLFHPVVLNCGHVYCESCIIDLPDEMLRCQVCQSPHPTGFPKVCLALDHFLEEQFPQEYARRRDSIQLSQIKVKPEATSFVLLLSGSLGETIAWWSDPGLAIHVGVGCDFCGMYPITGDRYRCVECKEKIGFDLCSDCYKTRSKLPGRFNQQHTPEHKFRLEQSYGTFRGQLNGQGSSLDLVIIADDPVSPDDGEDNQSNSEATN. 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10364 416 Pfam RING-type zinc-finger 206 230 IPR027370 -
Seca3g10364 416 SUPERFAMILY RING/U-box 305 371 - -
Seca3g10364 416 ProSiteProfiles Zinc finger ZZ-type profile. 314 378 IPR000433 GO:0008270
Seca3g10364 416 FunFam E3 ubiquitin-protein ligase PRT1 17 112 - -
Seca3g10364 416 SUPERFAMILY RING/U-box 196 247 - -
Seca3g10364 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 90 IPR013083 -
Seca3g10364 416 ProSiteProfiles Zinc finger RING-type profile. 206 244 IPR001841 -
Seca3g10364 416 ProSiteProfiles Zinc finger RING-type profile. 26 66 IPR001841 -
Seca3g10364 416 SUPERFAMILY RING/U-box 12 76 - -
Seca3g10364 416 PANTHER UNCHARACTERIZED 16 375 - -
Seca3g10364 416 FunFam E3 ubiquitin-protein ligase PRT1 308 373 - -
Seca3g10364 416 Pfam Zinc finger, ZZ type 314 354 IPR000433 GO:0008270
Seca3g10364 416 SMART zz_5 313 362 IPR000433 GO:0008270
Seca3g10364 416 SMART ring_2 206 243 IPR001841 -
Seca3g10364 416 SMART ring_2 26 65 IPR001841 -
Seca3g10364 416 MobiDBLite consensus disorder prediction 397 416 - -
Seca3g10364 416 Gene3D - 311 373 IPR043145 -
Seca3g10364 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 289 IPR013083 -
Seca3g10364 416 FunFam E3 ubiquitin-protein ligase PRT1 193 288 - -
Seca3g10364 416 ProSitePatterns Zinc finger RING-type signature. 221 230 IPR017907 -
Seca3g10364 416 Pfam Zinc finger, C3HC4 type (RING finger) 25 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10364 Seca-Chr3 248454333 248462706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10364 11 66 C3H Transcription Factor Family AT1G74990 36.842 8.78e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10364 - - gmx:100782681 547.74