Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10357 ATGGAAAACATTAATGAAAACGTTGGTGAGAATGTTGTTGGGTTGGAAGAAATTGAAAGTGAAGATGATGGTGGCAATGCATTTCATTACGACTCTCGTGAATTTGTAATTGGTGTGGATTCTGAGGCTAATTTTGTTGACATTAATCTTGACATGTTAACTGAGGAAAACTTGAGGAAATTAAATTTTGCTAATTTGGATGTTGCGTATAATTTTTATAATAATTGGTATGGAAAAATGAAGGGATTTTCAGCACGAAAGGGCAAAGAACGTAAAAATGCAATGGAAGAAATTATTGAGAAGACGTATCTATGCCATAGGGAAGGAAGGAGACCAATTAATACGAATGAAAAGATGGGGAAGAAAAAACGTGAAGCAAAGCCTGAGACAAGGTGTTTATGTCCTGCAAAAATGAAGGTTCGGTTATATGTACATTCTGGCCGTTAG 447 0.3557 MENINENVGENVVGLEEIESEDDGGNAFHYDSREFVIGVDSEANFVDINLDMLTEENLRKLNFANLDVAYNFYNNWYGKMKGFSARKGKERKNAMEEIIEKTYLCHREGRRPINTNEKMGKKKREAKPETRCLCPAKMKVRLYVHSGR. 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10357 148 Pfam FAR1 DNA-binding domain 71 143 IPR004330 -
Seca3g10357 148 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 6 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10357 Seca-Chr3 248395936 248396382 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g10357 FAR1 1.1e-10 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10357 - K17604 ahf:112717731 88.9669