Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10354 ATGGTGTCAGGTTCAGGGGTCTGCGCGAAGAGAGTAGTGGTGGACGCGCGCCACCACATGCTTGGTCGTCTCGCTTCCATCGTAGCAAAGGAGCTTCTCAATGGACAGAAAGTGGTGCTCGTTAGGTGCGAAGAGATTTGCATCTCTGGTGGTCTGGTAAGGCAGAAGATGAAGTACATGAGGTTCCTTCGTAAGCGCATGAACACAAAACCTTCCCATGGTCCAATCCACTTCCGTGCCCCTGCCAAGATCTTCTGGCGCACTGTTCGCGGGTACTGTCCCTTTCTCGTTCTGAAATTTCCGTTTGTTTATAGAATGATACCACATAAGACAAAGCGTGGGGAAGCTGCACTTGCTCGATTGAAGGTTTATGAAGGAATCCCTCCTCCATATGACAAGATGAAGAGAATGGTTGTCCCTGATGCTCTCAAGGTGTTGAGGCTTCAGAAAGGACACAAGTACTGCCTGTTGGGTAGATTGTCATCTGAGGTTGGATGGAACTACTATGACACCGTCAGGGAGCTGGAAAAGAAGAGAAAGGAAAGAGCACATTTGGTTTACGAGAGAAAGAAGCAGCTCAGCAAATTGAGGGTGAAAGCAGAGAAGGTTGCTGATGAGAAGCTCGGTTCCCAACTTGATATACTTGCTCCCGTTAAGTACTGA 663 0.4857 MVSGSGVCAKRVVVDARHHMLGRLASIVAKELLNGQKVVLVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGYCPFLVLKFPFVYRMIPHKTKRGEAALARLKVYEGIPPPYDKMKRMVVPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTVRELEKKRKERAHLVYERKKQLSKLRVKAEKVADEKLGSQLDILAPVKY. 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10354 220 CDD Ribosomal_L13 12 127 IPR005822 GO:0003735|GO:0005840|GO:0006412
Seca3g10354 220 PANTHER RIBOSOMAL PROTEIN L13 2 202 IPR005822 GO:0003735|GO:0005840|GO:0006412
Seca3g10354 220 SUPERFAMILY Ribosomal protein L13 12 168 IPR036899 GO:0003735|GO:0005840|GO:0006412
Seca3g10354 220 Hamap 50S ribosomal protein L13 [rplM]. 11 149 IPR005822 GO:0003735|GO:0005840|GO:0006412
Seca3g10354 220 Gene3D - 170 220 - -
Seca3g10354 220 FunFam 60S ribosomal protein L13a-4 8 168 - -
Seca3g10354 220 FunFam 60S ribosomal protein L13a 169 220 - -
Seca3g10354 220 ProSitePatterns Ribosomal protein L13 signature. 103 126 IPR023563 GO:0003735|GO:0005840|GO:0006412
Seca3g10354 220 Gene3D Ribosomal protein L13 7 168 IPR036899 GO:0003735|GO:0005840|GO:0006412
Seca3g10354 220 Pfam Ribosomal protein L13 10 92 IPR005822 GO:0003735|GO:0005840|GO:0006412
Seca3g10354 220 NCBIfam 50S ribosomal protein L13 12 168 IPR005755 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10354 Seca-Chr3 248384890 248386405 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10354 1 220 Cytoplasmic Ribosomal Protein Gene Family AT5G48760 84.545 1.69e-137 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10354 K02872 - gmx:100813340 388.652