Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10351 ATGGTTTGGGATGAGATGGTTCCATCCAAGATAAAAGACATGGCCCCATGTTGCACACGTACTAGTACTACTCTTACACTTTTTTCCCCTTTGTTCAAAATCCATCCTCTCAGAAACCCTTCAGAGGAATACAGAGAGAGAAACAGAGGGAGAAAGATGTCCCTTCCAAAACCCTCTGATGGTAATTCCCCTCAGCAGGTGAAAGAAGGAGCACCAGCAACAGCTTCATCCTCTTCTTCATGGAATATGCAAAACAGCCACAGAAATACTTTCCCCCCTTTAACTCTACAGATCAAAAGAAGCAAACTTGAAGATAGCGATGAAGATATGTTCACAGTTCCAGACGTGGAAGGCACGCCAATTAGTGTTCATTCTGCAGTGACTCCTCCAAATAGTAACCTCAATCAAAGTAACGTCACAGATCCTCAATCTCAAACTGGCTTTCCTGGAAAGCGCCGCAGGGGAAGAAACCCTGCAGATAAGGAACATAGACGCCTCAAGAGGTTGTTGAGGAACAGGGTATCTGCTCAACAAGCCCGCGAAAGAAAGAAGGTTTATGTGAATGACTTGGAATCAAGGGCTACAGAGTTGCAAGACAAGAATGCTATCTTAGAAGAGCGCATCTCAACTTTGATCAATGAGAACACCATGCTGCGGAAGGTTCTTATGAACGCAAGGCCAAAAGTTGATGATAGCATTGAACAGAAGCAGGATGAGTTGAGTAAAAGCTAA 732 0.4413 MVWDEMVPSKIKDMAPCCTRTSTTLTLFSPLFKIHPLRNPSEEYRERNRGRKMSLPKPSDGNSPQQVKEGAPATASSSSSWNMQNSHRNTFPPLTLQIKRSKLEDSDEDMFTVPDVEGTPISVHSAVTPPNSNLNQSNVTDPQSQTGFPGKRRRGRNPADKEHRRLKRLLRNRVSAQQARERKKVYVNDLESRATELQDKNAILEERISTLINENTMLRKVLMNARPKVDDSIEQKQDELSKS. 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10351 243 MobiDBLite consensus disorder prediction 39 54 - -
Seca3g10351 243 Gene3D Single helix bin 183 224 - -
Seca3g10351 243 FunFam Transcription factor HY5 183 224 - -
Seca3g10351 243 MobiDBLite consensus disorder prediction 120 162 - -
Seca3g10351 243 CDD bZIP_HY5-like 174 215 - -
Seca3g10351 243 SUPERFAMILY Leucine zipper domain 164 223 IPR046347 GO:0003700|GO:0006355
Seca3g10351 243 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 167 182 IPR004827 GO:0003700|GO:0006355
Seca3g10351 243 MobiDBLite consensus disorder prediction 124 147 - -
Seca3g10351 243 SMART brlzneu 160 224 IPR004827 GO:0003700|GO:0006355
Seca3g10351 243 MobiDBLite consensus disorder prediction 58 94 - -
Seca3g10351 243 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 162 225 IPR004827 GO:0003700|GO:0006355
Seca3g10351 243 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 59 239 IPR044280 GO:0000981|GO:0045944
Seca3g10351 243 Coils Coil 187 214 - -
Seca3g10351 243 MobiDBLite consensus disorder prediction 39 94 - -
Seca3g10351 243 Pfam bZIP transcription factor 161 220 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10351 Seca-Chr3 248350816 248353715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10351 143 232 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT3G17609 75.824 5.81e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca3g10351 bZIP_1 1.3e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10351 K16241 - gmx:100783826 302.367