Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10350 ATGGACCTGAGGGATGCATGGGTTAGCTTCTTTCTGTTTTGTAGTTTCTGGCTTGTCACTTTCTGTGGACAAGATGGTTTCTTGAGTCTTTCTTGTGGTGGAAGAACTAGTTTCCATGATTCATATAACATTTCATGGCTTCCAGACACCACCTACATAACCAGAGGCAAGACTACAACCATCACATACAATGATGGTTCCTCCTCATTGAATATCTCAGCTCGGTTCTTCCCAAATTCCAGAAGCCGCAGATGTTACAAAATACCAATGAACAATGCAACAACTTTGGTTCTTGTTAGAGCAAAATTTGTGTACAAGAACCATGATGGACTTGGAAAACCCCCAAGATTTTCTGTTTCTATTGGGACATGTATTGCTGCTACAATAAATCTTGCTGAACATGATCCATGGAGTGAAGAATTACTATGGACAGTGAATAAGGATACACTTCCATTCTGTTTAATTTCAATTCCAAAAGGTGGTTCACCTGTAATTTCTTCCCTTGAAATCCGACCACTTCCTCAAGGAGCCTACACTAGTGGCATTGAAGATTTTCCAAATAAGCTGCTAAAGAAGACTTATCGAATTGATTGTGGATGTACCAATGATTCTATCCGGTATCCCTTGGATCCATTTGATAGAATATGGGATGCTGATAGAAACTTCACACCCTTTCATGTTGCAATTGGGTTTAAGAATCAGCATAGCTTTAATCAGTTAAGCCTTTTGGAGGAACCACCAGCAGCTGTTATTCAAACTGGGAGAGTTTTGGCAAGACGAAATATGCTGACATATAACCTCCCTCTTAGCACATTAGGGGACTACTACATCATCCTCTACTTTGCTGGAATTCTTCCTGTCTTCCCCTCATTTGATGTCTTAATAAATGGAGATCTAGTAAAATCAAACTACACAATAAAGAGCTCAGAAATCAGTGTTTTATATGTTACACAAAAGGGAATCAGCAGCTTGAATATAACACTGAAGAGGATAAGCTTTTACCCTCTGATCAATGCATTTGAGGTTATTCAACAGTCCACAGGATTGGATCTTGGATGGCAGGATGATCCATGCTCTCCTTCACCCTGGGATAGAATTGATTGTGAAGGAAACCTTGTTACATCATTGGATCTTTCAGACATAAACTTGAGATCAATTAATCCTGCATTTGCTGACTTGTTAGACCTTAAAACATTGGATTTGCACAACACATCGCTTTCAGGTGAAATACAGAATTTGGATAGCTTGCAACATCTTGAGAAACTGAACATGAGTTTCAATCACTTAACATCCTTTGGTGTAGAGCTTGATAGCTTGATTAGTCTTCAAATATTTCTACTGGGAATAGTGCCTGATAGCTTGGGAGAGTTAGAGGACCTCCACTTACTGAATCTGGAAAACAACAAGCTACAAGGTCCACTACCACAGTCTTTGAAGAAAGAAACTTTAGAGATCAGAGCATCTGGGAATTTGTGCCTTACCTTTTCCACAACCAAATGTGATGATGCATCATCCAATCATTCAATTGAGACACCCCAAGTTACTTTGGTTCCTAAGAAGAAGCACAATGTACTTAACCATCTAGCAATAGTTCTAGGCATTGGAGGAGCCACAGTAGCCTTTCTCTTAATGTGTGTTTCAGTATTTATATACAAGACTAAACAGAAATATAAAGTCTCACAGACAGCAAGAGATGAAATGGATATGAGGAATTGGGGTGCAGCAAAAGTCTTTTCCTACAAAGAAATCAAAGTAGCTACAAGAAACTTCAAAGAAGTTATAGGAAGGGGAAGTTTTGGATCTGTTTATCTTGGAAAACTTCCAGATGGAAAATCAGTAGCTATCAAAGTTCGGTTTGATAAATCCCAACTTGGTGCTGATTCTTTTATCAATGAGGTTAACCTTTTGTCAAAAATCCGGCATCAAAATCTTGTGTCATTGGAAGGATTTTGTCATGAATCAAAGCATCAGATATTAGTTTATGAGTACTTACCTGGTGGATCCCTGGCTGATCATCTCTATGGTACAATTAGTCAAAAAACTTCCTTAAGCTGGGTTCGAAGGTTGAAAATTGCTGTTGATGCAGCAAAAGCATTGGATTATTTGCACAATGGAAGTGAGCCACGAATCATACACCGTGATATAAAGTGCAGTAATATCCTTTTGGATAGGGATATGAATGCCAAGGTGTGTGACTTAGGTCTCTCTAAGCAAGTAACTCATGCAGATGCAACTCATGTCACAACTATTGTCAAGGGCACTGCAGGGTATCTTGATCCAGAGTATTATTCAACTCAGCAGCTGACAGAGAAAAGTGATGTATATAGTTTTGGAGTTGTTCTTTTGGAACTCATTTGTGGAAGAGAGCCATTGACTCACTCTGGAAATCCTGACTCATTCAATTTGGTGTTATGGGCAAAGCCCTACTTGCAGGCAGGTGCATTTGAGATTGTAGATGAGGACATAAAAGGAACTTTTGATCCCTTGAGCATGAAGAAGGCAACTTTCATTGCTATAAAGTCAGTGGAGAGGGATGCATCACAGAGGCCATCTATTGCAGAGGTATTAGCAGAGCTAAAAGAAGCCTATAGTATTCAGCTCAGATTCCTTGAATCTTGTCATAATGAGAATTGA 2634 0.3918 MDLRDAWVSFFLFCSFWLVTFCGQDGFLSLSCGGRTSFHDSYNISWLPDTTYITRGKTTTITYNDGSSSLNISARFFPNSRSRRCYKIPMNNATTLVLVRAKFVYKNHDGLGKPPRFSVSIGTCIAATINLAEHDPWSEELLWTVNKDTLPFCLISIPKGGSPVISSLEIRPLPQGAYTSGIEDFPNKLLKKTYRIDCGCTNDSIRYPLDPFDRIWDADRNFTPFHVAIGFKNQHSFNQLSLLEEPPAAVIQTGRVLARRNMLTYNLPLSTLGDYYIILYFAGILPVFPSFDVLINGDLVKSNYTIKSSEISVLYVTQKGISSLNITLKRISFYPLINAFEVIQQSTGLDLGWQDDPCSPSPWDRIDCEGNLVTSLDLSDINLRSINPAFADLLDLKTLDLHNTSLSGEIQNLDSLQHLEKLNMSFNHLTSFGVELDSLISLQIFLLGIVPDSLGELEDLHLLNLENNKLQGPLPQSLKKETLEIRASGNLCLTFSTTKCDDASSNHSIETPQVTLVPKKKHNVLNHLAIVLGIGGATVAFLLMCVSVFIYKTKQKYKVSQTARDEMDMRNWGAAKVFSYKEIKVATRNFKEVIGRGSFGSVYLGKLPDGKSVAIKVRFDKSQLGADSFINEVNLLSKIRHQNLVSLEGFCHESKHQILVYEYLPGGSLADHLYGTISQKTSLSWVRRLKIAVDAAKALDYLHNGSEPRIIHRDIKCSNILLDRDMNAKVCDLGLSKQVTHADATHVTTIVKGTAGYLDPEYYSTQQLTEKSDVYSFGVVLLELICGREPLTHSGNPDSFNLVLWAKPYLQAGAFEIVDEDIKGTFDPLSMKKATFIAIKSVERDASQRPSIAEVLAELKEAYSIQLRFLESCHNEN. 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10350 877 Gene3D - 191 345 - -
Seca3g10350 877 Gene3D Phosphorylase Kinase; domain 1 559 663 - -
Seca3g10350 877 Gene3D Transferase(Phosphotransferase) domain 1 664 871 - -
Seca3g10350 877 SMART serkin_6 588 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g10350 877 ProSitePatterns Serine/Threonine protein kinases active-site signature. 710 722 IPR008271 GO:0004672|GO:0006468
Seca3g10350 877 SUPERFAMILY Protein kinase-like (PK-like) 575 862 IPR011009 -
Seca3g10350 877 ProSitePatterns Protein kinases ATP-binding region signature. 594 616 IPR017441 GO:0005524
Seca3g10350 877 Gene3D Ribonuclease Inhibitor 346 486 IPR032675 -
Seca3g10350 877 FunFam serine/threonine-protein kinase PBS1-like 555 663 - -
Seca3g10350 877 CDD STKc_IRAK 594 861 - -
Seca3g10350 877 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 664 870 - -
Seca3g10350 877 Pfam Malectin-like domain 30 343 IPR024788 -
Seca3g10350 877 ProSiteProfiles Protein kinase domain profile. 588 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g10350 877 Pfam Protein kinase domain 590 857 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g10350 877 PANTHER OS07G0107800 PROTEIN-RELATED 446 863 - -
Seca3g10350 877 SUPERFAMILY L domain-like 341 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10350 Seca-Chr3 248342049 248347735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10350 7 876 Receptor kinase-like Gene Family AT5G48740 60.690 0.0 1050
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Seca3g10350 Malectin_like 6.8e-50 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10350 - - aprc:113850446 1495.72