Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10346 ATGGCCACAAACGACGCCGTTTCACCCACCAAGAAGCCCCAACCCATCCCTTGGACACACCAAGAGACGGTTAACCTCATCAGGGCTTACCAAGAGAAATGGTACTCCCTCAAGCGGGGCCCACTCCGTGCCAACCAGTGGGAAGAGGTCGCCGTCATCGTCGCCGCTAAATGCGGCTACGATTTCAACCACCCTTCCAAATCCGCCCTCCAGTGCCGCCACAAGATGGAGAAGCTCCGCCAGCGCCACCGCGCTGAAAAGCACCGCCTCTCCTCCTCCGCCGCCACCACATCCGTCACGCCCCGCGCCTGGCAATACTCCGGCCTCATGGACGAGCTGGAGCGCGGCCCACTCCCCATCTCGGCCCAACCCCTCGCTTCTTTGGCCCCTTTCGATGAAGAAGATGATGATAACAATGACGACGACGATAATGATGATGATGAGAGGGAGAACTATATTAAATCAAGGACAAGGAGTATCAATTATATTCTCAGCCAGAGTCAGAGACACACAAAAACCAAATATGAAGGGTTTTCAAGGGAGCGTGTTTGGGATTATGACAATCACGATGATGATGATGAAGAAGAAGAAGAAGTGGTAGTGAGTGAGAGAGGGTTGGTTTCGGGGTTGACCGAAGAGATAAGATCTTTTACTGAGAGGATCATTGGGATGGAGAATTTGAAGATGGAGATGATGAAGGAAACTGAAAGGTTTAGGTTGGAGATGGAGAAAAAACGGATCCAGATGATTCTAGAATCACAACGGAGGGTTGTTGATTCGATTGCTAGGGCATTTGGATCTTCCAAGAGAATGAAGATTGGTCACCCAATCTGA 834 0.5096 MATNDAVSPTKKPQPIPWTHQETVNLIRAYQEKWYSLKRGPLRANQWEEVAVIVAAKCGYDFNHPSKSALQCRHKMEKLRQRHRAEKHRLSSSAATTSVTPRAWQYSGLMDELERGPLPISAQPLASLAPFDEEDDDNNDDDDNDDDERENYIKSRTRSINYILSQSQRHTKTKYEGFSRERVWDYDNHDDDDEEEEEVVVSERGLVSGLTEEIRSFTERIIGMENLKMEMMKETERFRLEMEKKRIQMILESQRRVVDSIARAFGSSKRMKIGHPI. 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10346 277 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 14 264 IPR044823 -
Seca3g10346 277 FunFam Trihelix transcription factor ASIL2 18 85 - -
Seca3g10346 277 Pfam Myb/SANT-like DNA-binding domain 17 112 IPR044822 -
Seca3g10346 277 Gene3D - 18 85 - -
Seca3g10346 277 MobiDBLite consensus disorder prediction 130 148 - -
Seca3g10346 277 ProSiteProfiles Myb-like domain profile. 17 80 IPR001005 -
Seca3g10346 277 MobiDBLite consensus disorder prediction 128 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10346 Seca-Chr3 248305210 248306043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10346 18 95 Trihelix Transcription Factor Family AT3G14180 29.487 1.57e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca3g10346 Myb_DNA-bind_4 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10346 - - adu:107474774 327.02