Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10344 ATGGAAGGTAGACGGAGGATAACGCTTTATGATCAAATGACAGCTACTGAGACCAGCAGCCGTAACTCTCTAGCTGGCTTGTTCCTAAACGACGTCGTGTTATCCAGCCAGAAGACCGAAGCCGCAGCCGCCGGGAACTGCGAGTTGAGCCGGAATCGAACCCTCTCAGATATCATCCGAGAAGACGAACCTAACAACACAAAGGATCGTATGTCATGGAAAGCCTTCAAGGACAAGCTTCGGCTCAAAGCTTGGACTTCCTCAGTTCATATTCCCATTCCAATTCAGAACAATAATAACAACACAGACTTATCTCAAACACGTCTTGACTCGGACGAGTCGACTCAGCACAGCATGGCTCACCAACAGCAGAACGACGTCGTCGAAGACCTTGATAGTTCAGATCTGGTCCAATTCTCGCATCAGAGCTCCTCACGATTTGTGCCTCCGGTCGACGCTCCAATTGCCGGCGGCGATGAGGCTGCGGCGGCGGGGTTGGTGAGTGTGTCGCTGATGGATTTGTTAGAGGAGACTGAAGCGGATTTGGATCGAATGAGCGATGATGAGGATGGTGTGGATGAGTATCAGGAAGAACGAGAAGATGAAGAGGAAAGGGAAGGGGAAAAGGGGAGTGTAGTGGAGTATAATTGCTGCGTGTGCATGGTGAGGCATAAAGGTGCGGCGTTTATACCATGTGGCCACACGTTTTGCAGGAAGTGTTCCAGGGAGCTTTGGGTGAGTAGAGGGAATTGCCCTCTTTGCAATCATTTTATATTAGAAATTCTTGATATTTTTTGA 798 0.4925 MEGRRRITLYDQMTATETSSRNSLAGLFLNDVVLSSQKTEAAAAGNCELSRNRTLSDIIREDEPNNTKDRMSWKAFKDKLRLKAWTSSVHIPIPIQNNNNNTDLSQTRLDSDESTQHSMAHQQQNDVVEDLDSSDLVQFSHQSSSRFVPPVDAPIAGGDEAAAAGLVSVSLMDLLEETEADLDRMSDDEDGVDEYQEEREDEEEREGEKGSVVEYNCCVCMVRHKGAAFIPCGHTFCRKCSRELWVSRGNCPLCNHFILEILDIF. 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10344 265 MobiDBLite consensus disorder prediction 96 125 - -
Seca3g10344 265 MobiDBLite consensus disorder prediction 179 207 - -
Seca3g10344 265 SUPERFAMILY RING/U-box 216 261 - -
Seca3g10344 265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 265 IPR013083 -
Seca3g10344 265 ProSiteProfiles Zinc finger RING-type profile. 217 255 IPR001841 -
Seca3g10344 265 Pfam Zinc finger, C3HC4 type (RING finger) 215 258 - -
Seca3g10344 265 PANTHER OS01G0917900 PROTEIN 4 265 - -
Seca3g10344 265 Coils Coil 185 205 - -
Seca3g10344 265 SMART ring_2 217 254 IPR001841 -
Seca3g10344 265 MobiDBLite consensus disorder prediction 180 204 - -
Seca3g10344 265 CDD RING-HC 217 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10344 Seca-Chr3 248265791 248267429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10344 4 265 C3H Transcription Factor Family AT3G25030 35.662 4.19e-41 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10344 - - gmx:100819018 249.21