Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10341 ATGGGTTTCCTAAATCATACTAATTACTTGTTGATTGCTCTGCTCATATTTTCCAGCTTTTGTTTGGGCTTGAGCTCTGTGAATGATACTATTACATCAACCAGATCCATCAGAGACAGTGAGACACTAAGCTCAAACAACAGTGACTTCAAGCTAGGATTCTTCAGCCCTGAAAACTCATCAAACCGTTATGTAGCAATCTGGTACATCTCTGAATCCTACATTATATGGATTGCTAATAGAGATCAACCTCTTAAGGATTCATCTGGGGTCTTCAAAATTCATAAGGATGGCAATCTTGTAATAATGAATGGACAAAATCATGTCATATGGTCAACAAATTTGTCAAGCACTACCAATTCAAGTGCTAAACTTGATGATTCAGGAAATCTGATCCTCAGAGATGTCACAAGTGGAGCTACAATATGGGATAGTTTCACACACCCTTGTGATGCAGCAGTGCCACAGATGAAAATTGGTGCAAACAGGGTCACAGGTAAGAAAATTGAGTACATATCAAGGAAAAGCAATTCTGATCCTTCTACTGGGTACTTCACAGGTAGTCTTGAACGTCTGGATGCTCCAGAAGTGTTTTTTTGGTTGAATAAAACTCAACCATATTGGAGAACTGGTCCATGGAATGGAAGGGTTTTCCTTGGAGCACCAAGGATGTTAACTGAGTATCTATTTGGATGGCGTTTAGATCATGATGATGATGGCACTGTTTATCTAACTTACAGTTTTGCTGACCCTTCTGCCTTTGGAATTCTCACCTTGACTCCACATGGCACACTAAAATTGGTAAGGTTTTTGAACAAAAAGGAAGTTTTGACACTTGAGGTGGATCAAAATGAATGTGATTTTTATGGCAAATGTGGGCCATTTGGAAGCTGTGATAATTCAACCCTACCAATTTGCAGCTGTTTTGATGGGTTTGAGCCACGGAATTCTGATGAATGGAGCAGGAAAAATTGGACTAGTGGATGTGTGAGAAAGGCAGAGGCAGCACTACAGTGTGAGAAGTTGAAAAATGGAAGTAATGTACAACAAGATGGGTTTTTGGTGTTTCATAATATGAAAGTACCAGATTTTGCAGAGAGATCAGATGGTAACCAAGACAAATGCGGAACAGATTGCTTAGCAAATTGTTCTTGTTTGGCATATGCATATGATTCTTATGTGGGTTGCATGTACTGGAGTAAAGACTTAATTGACTTGCAGAAGTTTCCTTATGGAGGAGTTGATCTCTTCATTCGTGTGCCAGCACAACTTCGAAAAAAGGAAAGAGGAAACAAGGCATTAATAATTATTGCTATTGCTGGGGGAATTGGAGCATTAACCTTTGCTATCTGTGCTTATCTTATGTGGCGGAAATGTACTGCTAGGCCTACAGGTAAAGTTGCCTCATTACAATTTCATAGCATTCAGATTTTTCGAAGTCAGCCTCAAGACTTGATGATTGGAGACAATAGACAAATCAAATTGGATGAGCTACCACTATATGGTTTTGAAAAGCTTGCAATTGCTACAAACAATTTTCACTTAGCTAATAAGCTTGGGAAGGGAGGTTTTGGTACTGTATATAAGGGAGAATTGGATGATGGCCAAGAAATTGCTGTGAAAAGATTATCAAAAGCTTCTGGACAAGGATTAGAAGAATTCATGAATGAAGTGGTGGTGATTTCCAAACTTCAACATCGCAATCTTGTAAGACTCCTTGGTTGTTGTGTTGAACGAGATGAACAAATGTTAGTTTATGAGTTCATGCCAAATAAGAGCTTGGATGCATTTCTCTTTGATCCACTACAAAAGAAAGTTTTAGATTGGAGAAAGCGCTTCAACATAATTGAAGGAATAGCTCGAGGTATACTTTATCTTCATAGAGACTCAAGACTAAGAATTATACATAGAGATCTTAAAGCAAGCAACATCTTACTTGATGGTGAGATGAATCCAAAAATATCAGACTTTGGTTTAGCTAGAATTTTCAAAGGTGGAGAAGATGATGAAGCTAACACAAGAAGGGTTGTTGGAACTTATGGTTATATGCCACCTGAATATGCAATGGAGGGGCTTTTCTCAGAGAAATCAGATGTCTATAGCTTTGGTGTTTTGCTGCTAGAGATTGTTAGTGGACGAAGAAACACTAGCTTTCATAACAATGAGGAATCACTTAGCCTTGTTGGATTTGCATGGAAACTATGGATGGAAGAAAAAATTATATCTTTAATAGATCCAGAGATATGGGATCCATGCTTTGAAAGTAGCATGTTGAGGTGCATACACATAGGGCTCCTATGTGTCCAAGAACTTCCAAAAGAAAGACCAACTATAGCAACTGTAGTTTTAATGCTCATAAGTGAGATTACACATCTTCCTCCTCCAAGGCAAGTTGCATTTGTCCAAAAGCAAAAGTATCAAAGTTCAGAGTCCTCACAAAAAAGTCAATTTAGCTCAAATAACAATGTAACTCTAAGTGAAATCCAGGGCAGGTAA 2496 0.383 MGFLNHTNYLLIALLIFSSFCLGLSSVNDTITSTRSIRDSETLSSNNSDFKLGFFSPENSSNRYVAIWYISESYIIWIANRDQPLKDSSGVFKIHKDGNLVIMNGQNHVIWSTNLSSTTNSSAKLDDSGNLILRDVTSGATIWDSFTHPCDAAVPQMKIGANRVTGKKIEYISRKSNSDPSTGYFTGSLERLDAPEVFFWLNKTQPYWRTGPWNGRVFLGAPRMLTEYLFGWRLDHDDDGTVYLTYSFADPSAFGILTLTPHGTLKLVRFLNKKEVLTLEVDQNECDFYGKCGPFGSCDNSTLPICSCFDGFEPRNSDEWSRKNWTSGCVRKAEAALQCEKLKNGSNVQQDGFLVFHNMKVPDFAERSDGNQDKCGTDCLANCSCLAYAYDSYVGCMYWSKDLIDLQKFPYGGVDLFIRVPAQLRKKERGNKALIIIAIAGGIGALTFAICAYLMWRKCTARPTGKVASLQFHSIQIFRSQPQDLMIGDNRQIKLDELPLYGFEKLAIATNNFHLANKLGKGGFGTVYKGELDDGQEIAVKRLSKASGQGLEEFMNEVVVISKLQHRNLVRLLGCCVERDEQMLVYEFMPNKSLDAFLFDPLQKKVLDWRKRFNIIEGIARGILYLHRDSRLRIIHRDLKASNILLDGEMNPKISDFGLARIFKGGEDDEANTRRVVGTYGYMPPEYAMEGLFSEKSDVYSFGVLLLEIVSGRRNTSFHNNEESLSLVGFAWKLWMEEKIISLIDPEIWDPCFESSMLRCIHIGLLCVQELPKERPTIATVVLMLISEITHLPPPRQVAFVQKQKYQSSESSQKSQFSSNNNVTLSEIQGR. 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10341 831 Gene3D - 24 148 IPR036426 -
Seca3g10341 831 SMART serkin_6 513 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g10341 831 SMART ntp_6 348 420 IPR003609 -
Seca3g10341 831 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 24 146 - -
Seca3g10341 831 ProSiteProfiles PAN/Apple domain profile. 339 421 IPR003609 -
Seca3g10341 831 CDD STKc_IRAK 519 785 - -
Seca3g10341 831 CDD EGF_CA 282 316 - -
Seca3g10341 831 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 14 776 - -
Seca3g10341 831 SUPERFAMILY alpha-D-mannose-specific plant lectins 66 215 IPR036426 -
Seca3g10341 831 PIRSF SRK 3 831 IPR024171 GO:0004674
Seca3g10341 831 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 589 793 - -
Seca3g10341 831 Pfam PAN-like domain 348 406 IPR003609 -
Seca3g10341 831 Pfam S-locus glycoprotein domain 208 315 IPR000858 GO:0048544
Seca3g10341 831 FunFam receptor-like serine/threonine-protein kinase SD1-8 487 588 - -
Seca3g10341 831 Pfam D-mannose binding lectin 75 175 IPR001480 -
Seca3g10341 831 Gene3D Transferase(Phosphotransferase) domain 1 589 793 - -
Seca3g10341 831 ProSiteProfiles Protein kinase domain profile. 513 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g10341 831 CDD B_lectin 34 149 IPR001480 -
Seca3g10341 831 ProSiteProfiles EGF-like domain profile. 282 318 IPR000742 -
Seca3g10341 831 ProSitePatterns Protein kinases ATP-binding region signature. 519 541 IPR017441 GO:0005524
Seca3g10341 831 Pfam Protein tyrosine and serine/threonine kinase 514 783 IPR001245 GO:0004672|GO:0006468
Seca3g10341 831 ProSiteProfiles Bulb-type lectin domain profile. 28 146 IPR001480 -
Seca3g10341 831 SMART blect_4 34 149 IPR001480 -
Seca3g10341 831 Gene3D Phosphorylase Kinase; domain 1 488 588 - -
Seca3g10341 831 MobiDBLite consensus disorder prediction 808 831 - -
Seca3g10341 831 SUPERFAMILY Protein kinase-like (PK-like) 498 812 IPR011009 -
Seca3g10341 831 CDD PAN_AP_plant 337 421 - -
Seca3g10341 831 ProSitePatterns Serine/Threonine protein kinases active-site signature. 634 646 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10341 Seca-Chr3 248231151 248235267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10341 501 831 Receptor kinase-like Gene Family AT4G11530 56.509 4.62e-125 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g10341 PK_Tyr_Ser-Thr 8.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10341 - - ccaj:109790907 1304.66