Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10331 ATGTCTCAATGGTGTACATTTGAACAGGTAGATGTAGACATTGATATTGAGTCCTCTCAATCATTCCCTATCACAGAAGAAATGAGAATCAAAGCACAGAATTTAAGGGAACAAGAGCGTAAGAGGAAAGAGAATGAAGAAAAAATATTGGAGAGAGAAAGAGAGAAGGAGAGGATTCAAGCAGGTAAGAAACTTCTTGAGGCTAAGCGAATTGCCGAAGAAAATGAAAGAAAACGGAATATATCCTTGAGAAAAGCAGAAAAAGAAGAAGAGAAAAGGGCTAGGGAAACTGTTCTCCAAAAACTAGAGCAGGATAAGTTAAATAGAAGGTCTAAACTTGGATTGCCTTTAGAAGGCCAAGTAACTGTGAGATCATCCACTGCTGCAGTAAAGCAAGAAAAGAATTTGAAGTCTGTTTATACAACTGCAAAAGTAGAGCATTTGAGACAATGTCTGAGGTCTCTCAAGCGTAACCACCAGGGTGAGAATGCCAGAGTCAGAAACGCCTTTGAAACACTTCTAGTGTATGTTAGAAATGTTGCCAAGAATCCCAAGGAGGAAAAATACAGGAAGATCAGACTGAGCAACCCATTATTCCAGGATAGAGTTGGAAGTTTAAATGGAGGCATAGAGTTTCTTGAGCTCTGTGGTTTTGAGAAAACTGGTGATTTCTTGTATCTTCCTCAAGAAAAGGTTGACATGGAACTACTAAATTCAGCTGGTTTTGTCTTAAATTCTGCAATGACAAATCCTTTCTTTGGAGTTTTAAGTACTTAG 777 0.3835 MSQWCTFEQVDVDIDIESSQSFPITEEMRIKAQNLREQERKRKENEEKILEREREKERIQAGKKLLEAKRIAEENERKRNISLRKAEKEEEKRARETVLQKLEQDKLNRRSKLGLPLEGQVTVRSSTAAVKQEKNLKSVYTTAKVEHLRQCLRSLKRNHQGENARVRNAFETLLVYVRNVAKNPKEEKYRKIRLSNPLFQDRVGSLNGGIEFLELCGFEKTGDFLYLPQEKVDMELLNSAGFVLNSAMTNPFFGVLST. 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10331 258 Coils Coil 28 60 - -
Seca3g10331 258 SMART PGNneu 168 229 - -
Seca3g10331 258 Gene3D - 140 246 - -
Seca3g10331 258 SUPERFAMILY PUG domain-like 146 252 IPR036339 -
Seca3g10331 258 Pfam PUB domain 165 233 IPR018997 -
Seca3g10331 258 Coils Coil 71 105 - -
Seca3g10331 258 PANTHER F13M7.16 PROTEIN 8 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10331 Seca-Chr3 248086745 248096474 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10331 4 256 C2H2 Transcription Factor Family AT1G04850 55.431 5.12e-68 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10331 - K24348 ccaj:109787719 375.555