Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10327 ATGACAGCACAACACAAGTTAATGGAAATGAACAACCAGAGAATTGAGGAAGAAAAAAAACTAGATGAGGCACGATTGTCCCAGGAAGTAGCATTGGCAATTGCAGAGAAAGAGAAAGCAAAAAGTAAAGCAGCGATGGAAACAACTAAAGCGGCTAAGAAAATTGCAAGGTTAGAATCCAATAGAGATGCAACTATTGAGTCAAAAGTTGTTAAAGAAGCAAAGGAAATGAGGGAACTATTGGATAATCTAGCCCAAACGGATGAAAGTTATAGGAGATACACAATTGAGGAGATTGAAACAGCTACAGACTTCTTTTCTGAATCTCGGAAAATTGGAGAGGGGGACTATGGCCCTATCTATAAATGTTACATTGATCACACTCCAGTGGCTGTCAAGGTTCTGCGTGCGGATTCTGCTCAAGGGAAGTCACAGTTTCAACAAGAGGTTAACATACTTGGGTGCATACGCCATCCCAACATGGTGCTTCTTCTAGGAGCCTGTCCAGAGCACAGGATACTGATCTATGAATATATGGCTAATGGAAGCTTAGAAGATTGCCACTTTCGAAAGAAGAAGAGTGGTCTTGTGTCTTGGCAGCTCAGGTTTCGAATAGCTACAGAGATAGCCACTGGCTTACTATTCCTCCATCGGACAAAGCCAGAACCGTTGGTGCACCGTGATCTGAAACCAGGAAACATTTTACTAGACCACAATTATGTAAGTAAGATTAGCGATGTTGGATTGGACAAACTTCTCCCTGCTGTAGCTTAA 774 0.4199 MTAQHKLMEMNNQRIEEEKKLDEARLSQEVALAIAEKEKAKSKAAMETTKAAKKIARLESNRDATIESKVVKEAKEMRELLDNLAQTDESYRRYTIEEIETATDFFSESRKIGEGDYGPIYKCYIDHTPVAVKVLRADSAQGKSQFQQEVNILGCIRHPNMVLLLGACPEHRILIYEYMANGSLEDCHFRKKKSGLVSWQLRFRIATEIATGLLFLHRTKPEPLVHRDLKPGNILLDHNYVSKISDVGLDKLLPAVA. 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10327 257 Coils Coil 77 97 - -
Seca3g10327 257 Gene3D Transferase(Phosphotransferase) domain 1 179 256 - -
Seca3g10327 257 Gene3D Phosphorylase Kinase; domain 1 76 178 - -
Seca3g10327 257 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Seca3g10327 257 Pfam Protein tyrosine and serine/threonine kinase 109 251 IPR001245 GO:0004672|GO:0006468
Seca3g10327 257 ProSiteProfiles Protein kinase domain profile. 106 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g10327 257 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 79 178 - -
Seca3g10327 257 Coils Coil 7 43 - -
Seca3g10327 257 PANTHER OS02G0152300 PROTEIN 7 255 - -
Seca3g10327 257 SMART serkin_6 106 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g10327 257 SUPERFAMILY Protein kinase-like (PK-like) 89 254 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10327 Seca-Chr3 248055704 248056906 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10327 1 257 Receptor kinase-like Gene Family AT1G78940 60.311 2.14e-96 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Seca3g10327 PK_Tyr_Ser-Thr 1.3e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10327 - - ahf:112740428 387.497