Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10318 ATGAGAGGCTTTGAATCACTAAATACCAAGAACTTGCTAAAGTTTATTGTCTTCTTCCAATGTGTGCCACGGATTTTACGGATAATTCCATTATATAAACAAGTTCGAAGGACCTCTGTCATTCTCACCAAAACAGCTGCATTCAATTTTTTTATATACACACTTGCAAGTCATGTTATTGGTGGCTTTTGGTACTTGCTTGCTATAGAAAGAGAAACTATGTGCTGGCAAAGTGCCTGTCAAAGAGATATCACATGTAACAAGGCAAACGTGTATTGTGATGACCCTCAAGGTTTGGGTACAACTTCAACATTCCTAAATGCTTCTTGCCCGATACAGGATCCAAACACAACGCTCTTTGATTTTGGAATATTCCTTAACGCCCTTCAATCTGGTGTCGTGGAGTCAACAAATTTCCCAAACAAGTTCTTTCATTGTTTTTGGTGGGGCCTACGAAATTTGAGTTCTCTTGGTCAGAACCTAGAAACCAGCTCAAATGTTTGGGAAAACTGCTTTTCAATATTCATTTCCATTTGTGGTTTGACATTTATGCAAGTAATAAATAGGAGATTAGAGGAAATGGTATTGAAACGGAGAGATATAGAACAGTGGATGGGCCATCGATGCCTCCCAAAAAGCCTGAAAGAAAGAATCAGACGATATGAACAGTACAAATGGCGAGAAACAAGAGGTGTTGATGAAGATAATTTAATTCGTAGTCTTCCCCATGATATAAGAAGGGACATTAAACGTTATCTATGTCGGAATTTGGTGTTGGGGGTTCCATTATTTGATGAATTGGATGAGAGGATACTAGATGCAATATGTGAAAGGCTAAAGCCTGCATTATGCACTGAAGGGACCTATCTTGTTCATGAGGGTGATCCTGTGAATGAGATGCTCTTCATAATTAGAGGCCATCTTGATTCTTACACCACAGATGGAGGCCGTGTTGGATTCTTCAACTCATACTTTATTGGGCCAGGAGATTTCTGTGGTGAAGAGCTATTAACATGGGCCATGGACCCAAGACCAAGTCTGATACTCCCATCTTCCACTAGAACAGTTAAAGCCAAATCAGAAGTAGAGGCCTTTGCACTCATAGCTGAAGACTTAAAATTTGTTGCATCTCAATTTAGAATACTACTACACAGTAAACAAGTGATGCATAAGTTCAGGTTTTGCTCACAACAATGGAGAACATGGGCTGCTTGTTTCATTCAAGCTGCATGGAGACAGCACAAGAAAAGGAAAGTAGCTGCTGAATTAATTAAGGGCCAGGGAGAATCTAGCAGCTTCTGA 1302 0.3986 MRGFESLNTKNLLKFIVFFQCVPRILRIIPLYKQVRRTSVILTKTAAFNFFIYTLASHVIGGFWYLLAIERETMCWQSACQRDITCNKANVYCDDPQGLGTTSTFLNASCPIQDPNTTLFDFGIFLNALQSGVVESTNFPNKFFHCFWWGLRNLSSLGQNLETSSNVWENCFSIFISICGLTFMQVINRRLEEMVLKRRDIEQWMGHRCLPKSLKERIRRYEQYKWRETRGVDEDNLIRSLPHDIRRDIKRYLCRNLVLGVPLFDELDERILDAICERLKPALCTEGTYLVHEGDPVNEMLFIIRGHLDSYTTDGGRVGFFNSYFIGPGDFCGEELLTWAMDPRPSLILPSSTRTVKAKSEVEAFALIAEDLKFVASQFRILLHSKQVMHKFRFCSQQWRTWAACFIQAAWRQHKKRKVAAELIKGQGESSSF. 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10318 433 ProSiteProfiles cAMP/cGMP binding motif profile. 263 348 IPR000595 -
Seca3g10318 433 Pfam Cyclic nucleotide-binding domain 286 373 IPR000595 -
Seca3g10318 433 SMART cnmp_10 263 394 IPR000595 -
Seca3g10318 433 FunFam Cyclic nucleotide-gated ion channel 1 261 379 - -
Seca3g10318 433 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 3 421 - -
Seca3g10318 433 Gene3D Helix hairpin bin 186 254 - -
Seca3g10318 433 Gene3D Jelly Rolls 261 381 IPR014710 -
Seca3g10318 433 Pfam Ion transport protein 15 184 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca3g10318 433 FunFam Cyclic nucleotide-gated ion channel 1 190 254 - -
Seca3g10318 433 SUPERFAMILY cAMP-binding domain-like 192 379 IPR018490 -
Seca3g10318 433 CDD CAP_ED 263 392 IPR000595 -
Seca3g10318 433 SUPERFAMILY Voltage-gated potassium channels 22 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10318 Seca-Chr3 247931454 247944809 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10318 1 414 Ion Channels AT5G53130 65.581 0.0 584
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10318 K05391 - gmx:100817516 603.208