Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca3g10293 | ATGAATGATTCAATTCAAGTGCCTATGAGCAAGTTATTAGAGCACATGACTTTCAACATAATTGTGAGGATGATTGCTGGGAAGAGATTTAGAAGTGAAACTATCAATGAAGAGAATAGTGAGGCATGGAGACTAAGGAAGGCAATTAAAGATACTACTTATCTTTGTGGTGTTTTTGTGGCGGCTGATGCTATTCCTTGCCTTAGTTGGTTTGATTTCCAAGGTTATGTGGGTTTCATGAAAAGGACTGCTAAGGAAATTGACTTCATTCTTGATAAGTGGATGCATGAACACTTGAGAAAGAGAGAGAATGATGGATGTGAAGATGATTTCATGGATGTGTTGATATCAATGTTCGATGGGCAAGAAATGATTTGTGGCCACAAGCGGGAGATAGTTATTAAAGCAACAGCACTGATGCTTATCCTTACAGCTTCAGGAAGCACAGCTATGACATTAACATGGGCACTTTCCTTGCTCCTAAACCATCCAAAGGTTCTAAAGGCTGCACAACAAGAGCTTGACACCAACATAGGAAAAGACAAATGGGTGCAGGAATCTGACATCAAAGACCTCAATTATCTACAAGCCATTGTCAAAGAGACCCTTCGTCTATATCCACCAGCACCCTTAACAGGAATAAGGGAGGCCATAGATGATTGCCACGTGGCAGGCTATTATGTCCCAAAAGGCACCCGTTTGCTAATTAACCTTTGGAAGCTACAAAGGGACCCACAGATTTGGTCCAACCCTGATGAGTTCCAACCTGAGAGGTTCCTCACATCTCAAGTGGACATTGATTTTCAGAGTAAAAGCTTTGAGTTAATCCCATTTGGGTATGGAAGAAGGTCATGTGCTGGCGTGACATTTGGGCTGCAAGTGGTGCACTTGACTTTGGCTCGGTTGCTTCAAGGCTTTGATATATACACAAAAGAAGGTGTTCCTGTTGATATGAGTGAAGGATTAGAACCAACAATCATAGTAGTAGCTATAGCTCTAGTGTTTCTCTACAACACATGGAGGATGAAAAGAAAATCCAATCACAAAATTCTACAAGCACCAGAAGTATCAGGTGGGTTACCTTTAATAGGTCACCTCCACCTACTAGGAAACCAAACACCTCTTGCAAGAACCTTTGCTTCATTGGGTGACAAATATGGCCCCATCTTCCAAATCCGTTTAGGAGCATACCCTGCCCTTGTGATTTCCAACCAAGAAGCAATCAAAGAATGTTTCACCACAAAGGACAAAATCCTAGCCTCACGCCCAAAATCAAGCCATGGAATTCACCTTGGTTATAACTATGCAGGTTTTGGATTTGCCCCTTATGGCTCTTATTGGACCAAGTTGAGAAAACTAACCATGCTTGAATTACTCTCTTCTCGCCGCCTTGAATCATTGAGACATGTTTATGAAACAGAGATTGATACTTTGATCAATGATCTCTCTTTGTATCTTAATAATACCTCTAAGGTTGTGATTATAAGTGAATGGTTGGAACGGTTGACCTTCAATATAATCACAAAGATGATTGCTGGGAAAAGGTATTTCAAGTATTTGCAAGATGTGGATGATGTAGAAGCACATGGTATTGTGAAACTTATTAAAGAATTTATGCATATTTCTGGGGAGTTTGTTCCCTCGGATTTGATTCCAATTCTTGGGTGGTTTGGTTTTCATGGTCATGTGTTGAAATCTATGAAACGAATTGCGAAGGATTTGGACACACTAGTGGGAAGTTGGGTTGAAGAGCATAAGAGTATTGGTGGTGGGAAGGTGTCAAGGGAGGAACGTGATTTCATTGATGTGATGCTGTCTGTGATTGAAGATGATCCTGCTTCTGGTCATACCCGTGATACCATCATCAAGGCAAATAGTATGAATCTGATGTTAGCTGGGTCAGACACAACATCGACAACAATGACATGGATCCTAGCCATATTGTTGAACAACAAGCATGCTTTGAAGCGTGGACAAGAGGAGATTGACCATCACGTGGGTAGGGACAGAAGGGTGGAAGCATCCGACATAAAAAACCTTGTTTTTCTTCAAGCCATTGTCAAGGAAACTTTGAGGTTATACCCTCCAGGGCCACTCTTGGTACCCCACGAGGCAAGAGAAGATTGCTACATTCATGGCTATTATGTGCCTAAAGGGACCCGTGTCTTTGCCAATGTGTGGAAATTACATAGAGACCCAAGTCTTTGGTCAGAGCCTGAGAAATTTTCACCCGAGAGGTTTATCAATGACAATGGAGAACTTGATGAAGGTCACCATTTTGAGTACCTCCCTTTTGGATCAGGGAGAAGAGCTTGCCCTGGATCTACGTTTGCTACACAAGTGAGTCTCATCACACTTGCTCGTTTGCTTCAAGGATTTGATTTGGATGTGCCGGTGGATGAACCTGTTGATATGAGAGAAGGCTTGGGCATAACCTTGCCTAAGTTAACTCCATTGCAAATTCTTATGACCCCACGACTATCCTATATATGA | 2493 | 0.4188 | MNDSIQVPMSKLLEHMTFNIIVRMIAGKRFRSETINEENSEAWRLRKAIKDTTYLCGVFVAADAIPCLSWFDFQGYVGFMKRTAKEIDFILDKWMHEHLRKRENDGCEDDFMDVLISMFDGQEMICGHKREIVIKATALMLILTASGSTAMTLTWALSLLLNHPKVLKAAQQELDTNIGKDKWVQESDIKDLNYLQAIVKETLRLYPPAPLTGIREAIDDCHVAGYYVPKGTRLLINLWKLQRDPQIWSNPDEFQPERFLTSQVDIDFQSKSFELIPFGYGRRSCAGVTFGLQVVHLTLARLLQGFDIYTKEGVPVDMSEGLEPTIIVVAIALVFLYNTWRMKRKSNHKILQAPEVSGGLPLIGHLHLLGNQTPLARTFASLGDKYGPIFQIRLGAYPALVISNQEAIKECFTTKDKILASRPKSSHGIHLGYNYAGFGFAPYGSYWTKLRKLTMLELLSSRRLESLRHVYETEIDTLINDLSLYLNNTSKVVIISEWLERLTFNIITKMIAGKRYFKYLQDVDDVEAHGIVKLIKEFMHISGEFVPSDLIPILGWFGFHGHVLKSMKRIAKDLDTLVGSWVEEHKSIGGGKVSREERDFIDVMLSVIEDDPASGHTRDTIIKANSMNLMLAGSDTTSTTMTWILAILLNNKHALKRGQEEIDHHVGRDRRVEASDIKNLVFLQAIVKETLRLYPPGPLLVPHEAREDCYIHGYYVPKGTRVFANVWKLHRDPSLWSEPEKFSPERFINDNGELDEGHHFEYLPFGSGRRACPGSTFATQVSLITLARLLQGFDLDVPVDEPVDMREGLGITLPKLTPLQILMTPRLSYI. | 831 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca3g10293 | 830 | PRINTS | E-class P450 group I signature | 684 | 702 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Seca3g10293 | 830 | PRINTS | E-class P450 group I signature | 772 | 795 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Seca3g10293 | 830 | PRINTS | E-class P450 group I signature | 641 | 667 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Seca3g10293 | 830 | PRINTS | E-class P450 group I signature | 502 | 520 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Seca3g10293 | 830 | PRINTS | E-class P450 group I signature | 762 | 772 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Seca3g10293 | 830 | PRINTS | E-class P450 group I signature | 407 | 428 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Seca3g10293 | 830 | PRINTS | E-class P450 group I signature | 383 | 402 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Seca3g10293 | 830 | PRINTS | E-class P450 group I signature | 725 | 749 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Seca3g10293 | 830 | PRINTS | E-class P450 group I signature | 621 | 638 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Seca3g10293 | 830 | Gene3D | Cytochrome P450 | 346 | 828 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Seca3g10293 | 830 | FunFam | Cytochrome P450 82C4 | 1 | 334 | - | - | |
| Seca3g10293 | 830 | SUPERFAMILY | Cytochrome P450 | 359 | 826 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Seca3g10293 | 830 | CDD | CYP82 | 387 | 826 | - | - | |
| Seca3g10293 | 830 | SUPERFAMILY | Cytochrome P450 | 7 | 328 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Seca3g10293 | 830 | Gene3D | Cytochrome P450 | 1 | 331 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Seca3g10293 | 830 | PRINTS | P450 superfamily signature | 763 | 772 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Seca3g10293 | 830 | PRINTS | P450 superfamily signature | 632 | 649 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Seca3g10293 | 830 | PRINTS | P450 superfamily signature | 685 | 696 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Seca3g10293 | 830 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 278 | 287 | IPR017972 | GO:0005506|GO:0016705 | |
| Seca3g10293 | 830 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 765 | 774 | IPR017972 | GO:0005506|GO:0016705 | |
| Seca3g10293 | 830 | FunFam | Cytochrome P450 82C4 | 343 | 824 | - | - | |
| Seca3g10293 | 830 | Pfam | Cytochrome P450 | 357 | 816 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Seca3g10293 | 830 | Pfam | Cytochrome P450 | 7 | 321 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Seca3g10293 | 830 | PANTHER | CYTOCHROME P450 82C3-RELATED | 330 | 829 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca3g10293 | Seca-Chr3 | 247601442 | 247610831 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca3g10293 | 353 | 827 | Cytochrome P450 | AT4G31940 | 49.180 | 8.16e-159 | 471 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca3g10293 | - | - | gmx:100790675 | 805.438 |