Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10254 ATGGAAGCTGATGGGATTGACGATGTTAAGATACCTTTGTTGCAGACTCCAAAAGAAAACGTCGCAGTTAAGACGGTTACGTTTCAAATCAGTGACATCAAGTGTGCTTCCTGTGTTAATTCCATTGAATCAGCAGTTAGGAACCTTGACGGCGTTGAAAGCATAGCGGTTTCGCCAATTGATGGCCGAGCCGCAATCAAATTTGTCCCCAAATTCGTAACTGCTAAAAGAATAAAAGAAAGCATAGAAGAGAGTGGGTTTAGAGTTGATGATGTCCATGATCATGAGCAAGATATAGCTGTGTGTCGAGTCAGGATTAAAGGAATGGCATGCACAAGCTGCTCTGAGTCTGTTGAGAATGCCCTTCAAATGGTTGATGGAGTGAAAAGGGCAATAGTTGGTCTGGCTTTAGAGGAGGCAAAAGTGCACTTTGATCCTAACCTCATTGGTGCTGACAAGATAATCGAAGCTATAGAAGACGCAGGCTTTGGAGCAGAACTTATTAGCTCTGGGAATGATGTGAACAAAGTGCATCTAAAACTTGAAGGGATTGATTCTGATGAGGATGCTTTTATAGTGGTGTCTTCTCTCGAGTTAGCTGCAGGGGTGAATCATGTTGAAATGGATTTGCTGGAACGTAAAGTTACAGTTAGTTATGATCCAGACATTACAGGTCCAAGATCTCTCATTCACTGTGTTCAGGAAGCTAGCCGTGGCTCCAAGATGTATCAAGCAACCTTGTATTCTCCTTCAGGACAAAGAGAAAAGGATAAGGTGAATGAAATTCGTATGTATAGGAACCAATTTTTGTTCAGCTGCTTGTTTTCGGTTCCTGTGTTCGTGTTTGCAATGGTGCTTCCCATGCTTCCACCATATGGCAACTGGTTAAATTATAAGATCCACAATATGCTTACTCTTGGGTTGTTTTTAAGATGGATCCTTAGCACGCCTGTGCAGTTCATAGTTGGCAAAAGGTTCTATGTGGGATCATATCATGCACTGAGGCGAAGATCTGCTAACATGGATGTGCTGGTTGCGCTAGGCACTAATGCTGCTTATTTTTACTCATTATACATTGTAATAAAAGCACTGACTTCAGACACATTTCAAGGACAAGATTTCTTTGAAACTAGTTCCATGTTGATATCCTTTATTCTATTAGGTAAATATTTGGAGATTGTGGCTAAAGGGAAAACATCAGATGCTTTAGGAAAGTTGACACAACTTGTTCCTGATAAAGCTTATTTGGTAGCAATTGATACTGATGAAATTGACACTCAACTTATACAAAAGAATGATATAATTAAGATTGTCCCTGGGACCAAAATTCCTGTTGATGGTATTGTTATAAAAGGGCAAAGCTATGCAAATGAAAGTATGATCACTGGGGAGGCAAGACCTGTTGTTAAAAGTCCAGGAGACAAGGTTATCAGTGGAACCGTCAATGAGAATGGCTGCTTGCTGGTTAAAGCCACACATGTTGGATCAGACACTGCACTTTCTCAAATTGTTCAACTTGTAGAAGCTGCTCAACTTGCCAAAGCACCAGTTCAAAAACTTGCGGACCATATTTCAAGGGTTTTTGTTCCAATAGTGGTTGTTACGGCACTCATAACTTGGCTGGGATGGTTCATTCCTGGGGAAGCTGGTATTTATCCTAAACATTGGATACCAAAAGCAATGGATGCATTTGAGCTTGCTTTGCAGTTTGCTATTTCTGTGCTAGTTGTTGCTTGCCCATGTGCTCTGGGTCTAGCAACACCAACTGCAGTCATGGTTGCCTCAGGCATCGGTGCTTCTCAAGGTGTGCTCATCAAGGGTGGAGATGCACTGGAAAAGGCACACAAGGTAAAAATGGTAGTGTTTGATAAGACCGGGACACTAACAGTTGGGAAGCCAGTGGTAGTTAGTGCAGTACTGTTTTCTGAATTTTCCATGGAGGAGTTATGTGACATGGCAATTTCTGTGGAGGTCCTTTTTTTTAATGTTACATACTGTACTTATGCAAGCAGTGAGCACCCATTAGCAAAAGCTGTTGTGGCACATGCAAAGAGGCTGCGCCAGAAGTTTGGTTCCTGCACTGAGGAAGTGCCAGATGTGGATGATTTTGAGGTACACCTGGGAGCCGGGATAAGTGGAAAGGTTGGTGATAGAACAGTTTTAGTTGGAAACAAGAGACTCATGCTTGCTTGTAATGTACCGATATGTTCTGAGGCTGAGAAGTACATCTCTGAGAATGAAATTCTGGCTAGAACTTGTGTTTTAGTTTCAATTAATGGAAAGATTGCTGGAGCATTCTCTGTAACTGATCCTGTAAAGCCTGAGGCTAAACGTGTCATATCTTTTCTCCACTCCATGGGCATCGCAAGCATCATAGTGACTGGTGATAACCGAGCTACTGCTACTGCTATTGCAAATGAACTTGGTATCGATGAGGTTTTTGCTGAGACAGATCCAGTGGGCAAAGCTGATAAGGTGAAAGACTTGCAGACAAAAGGAATGACTGTGGCAATGGTGGGCGATGGAATAAATGATTCACCAGCCTTAGTTGCTGCTGATGTTGGTATGGCAATTGGTGCTGGAACTGACATAGCTATAGAAGCAGCTGATATAGTTCTGGTCAAAAGCAGCTTGGAAGATGTGATTACAGCCATTGATCTATCTAGAAAGACCATGTCTCGTATCCGGTTGAACTACATTTGGGCTCTTGGTTACAACATTCTAGGCATGCCAATTGCTGCTGGTGTCCTTTACCCCTTTACTGGAATCAGATTGCCACCATGGCTTGCTGGTGCTTGCATGGCTGCTTCTTCTCTTAGTGTGGTTTCTTCGTCTCTTTTGCTGCAGTTCTATAAAAAACCTTTGCATGTAGAATCCATTTGA 2883 0.4232 MEADGIDDVKIPLLQTPKENVAVKTVTFQISDIKCASCVNSIESAVRNLDGVESIAVSPIDGRAAIKFVPKFVTAKRIKESIEESGFRVDDVHDHEQDIAVCRVRIKGMACTSCSESVENALQMVDGVKRAIVGLALEEAKVHFDPNLIGADKIIEAIEDAGFGAELISSGNDVNKVHLKLEGIDSDEDAFIVVSSLELAAGVNHVEMDLLERKVTVSYDPDITGPRSLIHCVQEASRGSKMYQATLYSPSGQREKDKVNEIRMYRNQFLFSCLFSVPVFVFAMVLPMLPPYGNWLNYKIHNMLTLGLFLRWILSTPVQFIVGKRFYVGSYHALRRRSANMDVLVALGTNAAYFYSLYIVIKALTSDTFQGQDFFETSSMLISFILLGKYLEIVAKGKTSDALGKLTQLVPDKAYLVAIDTDEIDTQLIQKNDIIKIVPGTKIPVDGIVIKGQSYANESMITGEARPVVKSPGDKVISGTVNENGCLLVKATHVGSDTALSQIVQLVEAAQLAKAPVQKLADHISRVFVPIVVVTALITWLGWFIPGEAGIYPKHWIPKAMDAFELALQFAISVLVVACPCALGLATPTAVMVASGIGASQGVLIKGGDALEKAHKVKMVVFDKTGTLTVGKPVVVSAVLFSEFSMEELCDMAISVEVLFFNVTYCTYASSEHPLAKAVVAHAKRLRQKFGSCTEEVPDVDDFEVHLGAGISGKVGDRTVLVGNKRLMLACNVPICSEAEKYISENEILARTCVLVSINGKIAGAFSVTDPVKPEAKRVISFLHSMGIASIIVTGDNRATATAIANELGIDEVFAETDPVGKADKVKDLQTKGMTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLVKSSLEDVITAIDLSRKTMSRIRLNYIWALGYNILGMPIAAGVLYPFTGIRLPPWLAGACMAASSLSVVSSSLLLQFYKKPLHVESI. 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10254 960 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 18 956 - -
Seca3g10254 960 SUPERFAMILY Calcium ATPase, transmembrane domain M 373 614 IPR023298 -
Seca3g10254 960 NCBIfam heavy metal translocating P-type ATPase 341 948 IPR027256 GO:0006812|GO:0016020|GO:0019829
Seca3g10254 960 Gene3D - 19 90 - -
Seca3g10254 960 FunFam ATPase copper transporting beta 22 93 - -
Seca3g10254 960 Pfam E1-E2 ATPase 421 599 - -
Seca3g10254 960 CDD P-type_ATPase_Cu-like 269 935 - -
Seca3g10254 960 SUPERFAMILY HAD-like 619 945 IPR036412 -
Seca3g10254 960 ProSitePatterns Heavy-metal-associated domain. 30 58 IPR017969 GO:0046872
Seca3g10254 960 SUPERFAMILY HMA, heavy metal-associated domain 23 91 IPR036163 GO:0046872
Seca3g10254 960 Pfam haloacid dehalogenase-like hydrolase 617 853 - -
Seca3g10254 960 ProSiteProfiles Heavy-metal-associated domain profile. 24 90 IPR006121 GO:0046872
Seca3g10254 960 ProSitePatterns Heavy-metal-associated domain. 106 135 IPR017969 GO:0046872
Seca3g10254 960 SUPERFAMILY HMA, heavy metal-associated domain 170 241 IPR036163 GO:0046872
Seca3g10254 960 FunFam Probable copper-transporting ATPase HMA5 755 896 - -
Seca3g10254 960 NCBIfam copper ion binding protein 104 164 IPR006122 GO:0005507
Seca3g10254 960 NCBIfam copper ion binding protein 26 89 IPR006122 GO:0005507
Seca3g10254 960 NCBIfam HAD-IC family P-type ATPase 381 654 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g10254 960 NCBIfam HAD-IC family P-type ATPase 735 916 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g10254 960 PRINTS P-type cation-transporting ATPase superfamily signature 839 858 - -
Seca3g10254 960 PRINTS P-type cation-transporting ATPase superfamily signature 862 874 - -
Seca3g10254 960 PRINTS P-type cation-transporting ATPase superfamily signature 457 471 - -
Seca3g10254 960 PRINTS P-type cation-transporting ATPase superfamily signature 764 775 - -
Seca3g10254 960 PRINTS P-type cation-transporting ATPase superfamily signature 786 796 - -
Seca3g10254 960 PRINTS P-type cation-transporting ATPase superfamily signature 621 635 - -
Seca3g10254 960 SUPERFAMILY Calcium ATPase, transduction domain A 423 507 IPR008250 -
Seca3g10254 960 PRINTS Copper-transporting ATPase 1 signature 51 74 - -
Seca3g10254 960 PRINTS Copper-transporting ATPase 1 signature 25 50 - -
Seca3g10254 960 PRINTS Copper-transporting ATPase 1 signature 124 145 - -
Seca3g10254 960 SUPERFAMILY HMA, heavy metal-associated domain 97 171 IPR036163 GO:0046872
Seca3g10254 960 ProSiteProfiles Heavy-metal-associated domain profile. 100 166 IPR006121 GO:0046872
Seca3g10254 960 CDD HMA 104 166 IPR006121 GO:0046872
Seca3g10254 960 ProSitePatterns E1-E2 ATPases phosphorylation site. 623 629 IPR018303 -
Seca3g10254 960 Gene3D - 718 770 IPR023299 GO:0000166
Seca3g10254 960 Gene3D - 628 717 IPR023299 GO:0000166
Seca3g10254 960 FunFam Copper-transporting ATPase HMA5 99 170 - -
Seca3g10254 960 Pfam Heavy-metal-associated domain 103 163 IPR006121 GO:0046872
Seca3g10254 960 Pfam Heavy-metal-associated domain 27 87 IPR006121 GO:0046872
Seca3g10254 960 Gene3D - 101 171 - -
Seca3g10254 960 Gene3D - 588 896 IPR023214 -
Seca3g10254 960 CDD HMA 27 89 IPR006121 GO:0046872
Seca3g10254 960 FunFam Copper-transporting ATPase 1, putative 396 511 - -
Seca3g10254 960 SFLD C1.7: P-type atpase like 603 891 - -
Seca3g10254 960 ProSiteProfiles Heavy-metal-associated domain profile. 175 241 IPR006121 GO:0046872
Seca3g10254 960 SFLD p-type atpase 603 891 IPR044492 -
Seca3g10254 960 Gene3D - 396 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10254 Seca-Chr3 247256384 247263475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10254 23 954 Primary Pumps ATPases AT1G63440 56.522 0.0 1053
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10254 K17686 - gmx:100793894 1659.04