Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10245 ATGGAAAACCAGTTCTTTTTGAATGCTGGGGTGTCTCATCCCTTGCACTTTGAACCTTCACCTAATTCCTCAATGCCCACTTGGCAATCACTCCCCTCACCTATGGAAATTCAACCAACAGTTCTCAACTGTTCCTCTGAGCAAACCCAAGATTGTTTCTACAACCCCACATGGGACAAGTCAACGGATCATCATGGTCTTCAATTTGATTCTGCACTGAGTTCAATGGTCTCATCCCCTGCAGCATCCAATAACCCCAACATGTCCAATGAGAATTTTGTGATGAGGGAATTGATAGGGAAATTAGGAGCTGTTGGAAACTCTGATGAGATCTCACCACATTCTCAGCCTTTGGTTGTTGCATCTTCTTACATGAATGGTGGGAATAACAGCACCAACACTTCATGTTACAGCACCCCTTTGAGTTCTCCTCCAAAGCTCAACATTTCCCCAATGATGAACCATTTGGTGAAAGAGAATTTGCCTAAACCAATGGCTCTCAATTCCAGTGTGGCAGAATTCTCAGCTGATCCTGGTTTTGCTGAGAGGGCTGCAAAGTTTTCTTGTTTTGGGAGCAGGAGTTTCAATGATAGGAGTAGCCAATTGGTTGTGAACAATGGTGAATTACCTCAGAGATCTGCACCAGTTATGGAAAATGGGAAGCTACTAACAAGAGTCTCAAGTAGTCCATCACTCAAGACATTTGGATCTCAAATTGAGAACAAGAATAGTCCATTACAGGATCAGGATAGAATGGAAGTGGCAAATTCTCAAGAGGAATCTACAATCTCTGAGCAAACCCCAAATGGAGAAATAGGTGTAAAAACTTCCCCTGATATGAATTCCAGGAAAAGAAAATCTTCTTCCAAAGGAAAAGCTAAAGAAGCTTCAAACTCTACCAAGGTGAAGGGTGTTGAAGGTAGTGGAGAAGACTCAAATGCAAAGCGTAGCAAAGCAAATGAGGGTGAGGGAAATGAAAATGGCACAATGAAGGTTGAGGAAGAGTCCAAAGGAGGTACTACTAATGCAGGGGAAGAGAAACAGAACAAAGGTAACTCTAATTCTAAACCTCCTGAGCCACCAAAAGATTACATTCATGTTAGAGCAAGAAGAGGCCAAGCTACTGACAGCCATAGTCTTGCAGAACGTGTAAGGAGGGAGAAAATCAGTGAGAGGATGAAGCTTCTCCAAGATCTTGTACCAGGTTGTAATAAGGTCACTGGTAAGGCACTTATGCTTGATGAAATTATAAACTATGTTCAGTCATTGCAGCGCCAAGTTGAGTTCCTATCTATGAAATTGGCATCTGTTAACACAAGGATGGATTTTAGTATTGAGAGTCTTATCTCAAAAGATATATTTCAATCAAATAATTCTTTGGCAAACCCAATATTCCCATTAGATTCCTCAGCACCAGCCTTTTATGGTCACCAGCCACAGCAAAACCCAGCTATCCATAATAACATTCCTAATAGAACCATGTCCCACACCTCAGTGGACCCATTAGATTCTTCTTTGATCCAAAATCTTGGCATGCATTTACCTCCCTTAAATGGGTTTAATGAAGGTTCCTCTCAGTATCCATTAACATTCTGTGAAGATGACCTCCACACAATTGTTCAGATGGGATTTGGCCAAACTACAAACAGGAAAACACCAACACAGTCTCCAAGCTTCAACGGTTCAAATCAAGTACCACAAATGAAAGTTGAGCTTTGA 1719 0.4154 MENQFFLNAGVSHPLHFEPSPNSSMPTWQSLPSPMEIQPTVLNCSSEQTQDCFYNPTWDKSTDHHGLQFDSALSSMVSSPAASNNPNMSNENFVMRELIGKLGAVGNSDEISPHSQPLVVASSYMNGGNNSTNTSCYSTPLSSPPKLNISPMMNHLVKENLPKPMALNSSVAEFSADPGFAERAAKFSCFGSRSFNDRSSQLVVNNGELPQRSAPVMENGKLLTRVSSSPSLKTFGSQIENKNSPLQDQDRMEVANSQEESTISEQTPNGEIGVKTSPDMNSRKRKSSSKGKAKEASNSTKVKGVEGSGEDSNAKRSKANEGEGNENGTMKVEEESKGGTTNAGEEKQNKGNSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRMDFSIESLISKDIFQSNNSLANPIFPLDSSAPAFYGHQPQQNPAIHNNIPNRTMSHTSVDPLDSSLIQNLGMHLPPLNGFNEGSSQYPLTFCEDDLHTIVQMGFGQTTNRKTPTQSPSFNGSNQVPQMKVEL. 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10245 572 CDD bHLH_AtBPE_like 363 448 - -
Seca3g10245 572 SMART finulus 379 429 IPR011598 GO:0046983
Seca3g10245 572 Pfam Helix-loop-helix DNA-binding domain 377 424 IPR011598 GO:0046983
Seca3g10245 572 FunFam Basic helix-loop-helix transcription factor 370 442 - -
Seca3g10245 572 MobiDBLite consensus disorder prediction 229 364 - -
Seca3g10245 572 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 255 486 IPR024097 GO:0006355
Seca3g10245 572 MobiDBLite consensus disorder prediction 308 341 - -
Seca3g10245 572 Gene3D - 370 444 IPR036638 GO:0046983
Seca3g10245 572 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 371 442 IPR036638 GO:0046983
Seca3g10245 572 MobiDBLite consensus disorder prediction 547 572 - -
Seca3g10245 572 MobiDBLite consensus disorder prediction 342 356 - -
Seca3g10245 572 MobiDBLite consensus disorder prediction 229 276 - -
Seca3g10245 572 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 373 423 IPR011598 GO:0046983
Seca3g10245 572 Coils Coil 420 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10245 Seca-Chr3 247112758 247115584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10245 1 526 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 43.527 1.28e-110 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g10245 HLH 4.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10245 - - gmx:100812081 802.742