Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10242 ATGGCTTCTTCATCCAATCCCCAATGGATCTACGACGTGTTCATCAATTTCAGGGGAGTAGACACTCGTGAGAACTTCGTTCGTGATCTGTATGCTGCGCTCTCAAATGCGGGAATCAACACTTTCCTGGACAATGAGGAGCTTCAAAAGGGACAGGAGCTGAAACCAGAACTGTTGCGAGCAATAGAAGGCTCTCAGATATCTTTAGTTGTTCTCTCTCAGAACTATAGCGGATCTAGTTGGTGTCTTAGCGAGCTGGAAAAAATCATGGAGTGCCACAGAACTCATGGCCAGGTGGTTATTCCCATCTTTTACGACGTTGATCCATCGGCTGTGCGTAAGCAGTTTGGTGCTTTTGGAAAAGCATTGGAAGCAACTGCAGGAGAAAGATACTCAAGGGAGGAAGAGACGGAAATGTTGTGGAGGTGGAGGACTGCACTCACTCAAGTTGCAAATTTGTCTGGTTGGGATGCGGGGGCATACAGGAAACAAGGTGGAGTAGTGGACCGTATTGTTGAATCCATTTTGACTAGAATAAGCCACCCACTGCCTATTACCGAATTTCCAGTTGGATTAGAATACCGTGTGGAACAAGTGATTCAATTGATTGAAAGTCGATCAAACAACGTTTGTATAATAGGGATATGGGGAATGGGAGGATCGGGTAAAACAACCCTAGCCAAAGCCATCTACAACCAAATTCATCCCAAATTTGTGTGTAGAAAATTCATTGAAAATATTAGACAAGTTTGTGAAGAAGATAATAGAGGGCATATTCATTTACAAGAACAACTTCTTTCAGGTGTCTTGAAACCAAAGGAGAAGATACATAGCATTGCCATGGGGACAACTATGATAGAGAAAAAACTTGCTGGAAAAAGGGCAATCATTGTACTTGATGATGTCACCACATTTCAGCAAGTAAAAGTCTTGTGTGGAAATTGTAAATGGTTTGGTCCATCAAGTGTATTAATTGTTACAACCAGAAATGTACGCCTTCTTAATTTACTTAAAGTTGACCATGTCTGCAAAATGAACGAAATGGACCAGAATGAGTCCCTTGAGCTTTTCAGTTGGCATGCTTTTAGAGAAGAGAGTCCAATACAAGACTTCAGGGAACTCTCAAAAAATGTAGTTGCTTACTGTGGAGGATTACCACTAGCTCTTGAAGTCCTTGGATCTTACTTATTTGACAGGACAGAACAAGAATGGAAAAGTGTATTGTCAAAACTGGAGAGAATTCCCAATGATCAAGTGCATGAGAAATTGAGAATAAGCTATGATGGTTTGAGGGATGATATGGAAAAGGATATATTTCTTGACATATGCTTTTTCTTCATTGGTAAGGACAGAGCCTATGTTACAGAGATATTAAATGGCTGTGAATTTTATGCTGATATTGGAATTACAGTACTCATAGAGCGGAGCCTCATAAAAGTTGAACAGAAGAACAAGCAATGGATCTACGACGTGTTCATCAATTTCAGGGGAGTAGACACTCGTAGGAAATTCGTTTCTCATCTCTATGCTGCGCTCTCAAATGCCGGAATCAACACTTTCATAGATTACAAGCTAGACATTGGAACGGTGCTGAAACCAGAACTATTGCGAGCAATAGAAGGCTCTCAGATATCAATAGTTGTTCTCTCTGAAAATTATGCTGGATCTAGTTGGTGTCTTGATGAACTGCTAAAAATCATGGAATGCCACAGAACTTATGGCCAGGTGGTTTTCCCCATATTTTACAATGTTGAGCCATCGGATGTGCGTTATCAGAAGGGTGCTTTTGGAGAAGCTTTGGAAGCAACTGCAAAAAGATACTCAGAGTCAGGGGAGGAAGAGATGAAAGATGTGCTATCGAGGTGGAGGACTGCACTCACCGAAATTGCAAATTTGTCTGGTTGGGTTTTGTGCAATTCAAGGAGTGAAGCTGAACTAGTGAAGAGAATTTATGAGGAAGTTCTGGCAAAACTAGACAAGACTTTTTTGTCTATTACCGAATTTGCGGTTGGATTAGAATCTGGTGTGCAACAAGTGATTGGATTTATTCAAGATCATTCAAGTGAGGTTTGTGTAGTAGGGATCTGGGGAATGGGAGGGTCGGGTAAAACAACCATAGCCAAGATCATCTACAATCAAATTCATCGCAAATTTGTGGGTAGAAGTTTCATTGAAAATATTAGAGAAGTTTGTGAAAAAGATAGTAGAGGGCATGTTCATTTACAAGAACAACTTCTTTTAGATGTCCTAAAAAGAAAGGAGAAGATATATAACATTGCGTTGGGGACAACTACTATTGAGAAAAGACTTTGGGGGAGAAGGGTGCTCATCGTACTTGATGATGTGAATAAGTTTGAGCAATTAAAAGAACTATGTGGAAATCGTAAACGGCTTGGTCTAGGAAGCGTGTTAATTGTTACGACCAGAGATGTACGCCTTCTTAAATTACTTAAAGTTGACTATGTCTATAAAATGAAAGAAATGGATGAAAATGAGTCCCTTGAGCTTTTCAGTTGGCATGCTTTTGGAGAAGCGAGTCCAAGTGAAGGCTTCAGTGAACTCTCAAGAAATGTAGTTGCCTACTGTGGAGGATTACCGCTAGCTCTTGAAGTGCTTGGATCTTACTTATGTGAAAGGACAAAACAAGAATGGAAAAGTGTGTTAGCAAAACTAGAGAGAATTCCCAATGATCAAGTGCAGGAGAAACTCAGAATAAGCTATGATGGTTTAAATGAAGATACGGAAAAGGATATATTTCTTGACATATGTTGTTTTTTCATTGGTAAGGACAGAGGCTATGTTACAGAGATACTAAATGGCTGTGGACTTTATGCTGATATTGGAATAACAGTCCTCATAGAGCGGAGCCTCATAAAAGTTGAACAGAATAACAAGCTTAAGATGCATGATTTGCTACGAGACATGGGAAGAGAAATTGTTCGTCAAAGTTCAGCAAAAGAGCCTGGGAAGCGTAGTCGATTGTGGTTTCACAAGGATGCACACGATGTTTTGGCAAATAATACGTTGCAAAGAACCGGTAGAGTTTGCTTTAGTACTAATGCTTTCAAGGAGATGAAGAAACTGAGACTTTTACAACTAGATCAAGTTGACCTCATTGGAGATTATGGGCATCTTTCCAAGCAGCTGAGATGGGTCCATTGGAAAGGATTTACTTTCAAATATATACCGGATGACTTTTATCAGGGAAATCTAGTTGTTATTGACCTAAATTACAGTAATATTAAACAGGTTTGGAAGGAAACCAAGTTGTTGGAGAAGCTAAAAATTCTCAATCTCAGTCATTCCAGGTACTTGAAAAACACCCCTGACTTTTCAAAACTGCCAAATCTAGAAAAGCTCATCTTGAAGGATTGTCCAAGTCTGTCTAAGGTACACCAGTCCATTGGAGATCTCAGTAATATTCTTCTGATAAATTTGAAGGACTGTACAAGCCTAAGCAATCTCCCAAGGAAGATCTATCAGTTGAAATCTTTGAAAACTCTCATCCTTTCTGGTTGTTCAAAGATAGATGTGTTGGAAGAAGATATAGAGCAGATGGAATCCTTGACAACACTGATCGCAAAAGGTACAGCTGTAAAAGAAGTGCCCCATTCATTAGTAAGATCAAAGAGCATTGGATATATATCCTTGTGTGAATATAAAGGATTTGCTCGTGAAGTATTTCCTTCTCTCCTTTGGTCTTGGATGTCACCAACAATGAATCCCATGTCCTGTATTCCTTCATTTGGGAGCTTGTCATCGTCTCTAGCTTTCATGGATGTACAAAATAATAATTTGGGTGATCTCTCCCCAATGATTAGTGGCCTTTCAAAACTTCGAACTGTTTGGGTGCAATGTGACACAGAGTTTCAACTATCTGAACAATTACAGAAATTTCTGGATGATGCAAATTATGATGGAAATTATGTTTCTGATTTGCCATCAACATCATATGCAAAAGCATCACAGACGTTGAGGTTTCAATGGATTGGAATAGGAAGTTACCACAATGTCCTCGATGCTCTTAGCAACAACACATCAGAGGTTCCATCTCCATCCCTGACTCATCAACCTTTATTATTCATCTTCACTATTCTTAGGATAATTTAG 4110 0.3954 MASSSNPQWIYDVFINFRGVDTRENFVRDLYAALSNAGINTFLDNEELQKGQELKPELLRAIEGSQISLVVLSQNYSGSSWCLSELEKIMECHRTHGQVVIPIFYDVDPSAVRKQFGAFGKALEATAGERYSREEETEMLWRWRTALTQVANLSGWDAGAYRKQGGVVDRIVESILTRISHPLPITEFPVGLEYRVEQVIQLIESRSNNVCIIGIWGMGGSGKTTLAKAIYNQIHPKFVCRKFIENIRQVCEEDNRGHIHLQEQLLSGVLKPKEKIHSIAMGTTMIEKKLAGKRAIIVLDDVTTFQQVKVLCGNCKWFGPSSVLIVTTRNVRLLNLLKVDHVCKMNEMDQNESLELFSWHAFREESPIQDFRELSKNVVAYCGGLPLALEVLGSYLFDRTEQEWKSVLSKLERIPNDQVHEKLRISYDGLRDDMEKDIFLDICFFFIGKDRAYVTEILNGCEFYADIGITVLIERSLIKVEQKNKQWIYDVFINFRGVDTRRKFVSHLYAALSNAGINTFIDYKLDIGTVLKPELLRAIEGSQISIVVLSENYAGSSWCLDELLKIMECHRTYGQVVFPIFYNVEPSDVRYQKGAFGEALEATAKRYSESGEEEMKDVLSRWRTALTEIANLSGWVLCNSRSEAELVKRIYEEVLAKLDKTFLSITEFAVGLESGVQQVIGFIQDHSSEVCVVGIWGMGGSGKTTIAKIIYNQIHRKFVGRSFIENIREVCEKDSRGHVHLQEQLLLDVLKRKEKIYNIALGTTTIEKRLWGRRVLIVLDDVNKFEQLKELCGNRKRLGLGSVLIVTTRDVRLLKLLKVDYVYKMKEMDENESLELFSWHAFGEASPSEGFSELSRNVVAYCGGLPLALEVLGSYLCERTKQEWKSVLAKLERIPNDQVQEKLRISYDGLNEDTEKDIFLDICCFFIGKDRGYVTEILNGCGLYADIGITVLIERSLIKVEQNNKLKMHDLLRDMGREIVRQSSAKEPGKRSRLWFHKDAHDVLANNTLQRTGRVCFSTNAFKEMKKLRLLQLDQVDLIGDYGHLSKQLRWVHWKGFTFKYIPDDFYQGNLVVIDLNYSNIKQVWKETKLLEKLKILNLSHSRYLKNTPDFSKLPNLEKLILKDCPSLSKVHQSIGDLSNILLINLKDCTSLSNLPRKIYQLKSLKTLILSGCSKIDVLEEDIEQMESLTTLIAKGTAVKEVPHSLVRSKSIGYISLCEYKGFAREVFPSLLWSWMSPTMNPMSCIPSFGSLSSSLAFMDVQNNNLGDLSPMISGLSKLRTVWVQCDTEFQLSEQLQKFLDDANYDGNYVSDLPSTSYAKASQTLRFQWIGIGSYHNVLDALSNNTSEVPSPSLTHQPLLFIFTILRII. 1370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10242 1369 SUPERFAMILY Toll/Interleukin receptor TIR domain 484 635 IPR035897 -
Seca3g10242 1369 Gene3D - 347 431 IPR042197 -
Seca3g10242 1369 Gene3D - 827 911 IPR042197 -
Seca3g10242 1369 SMART till_3 10 153 IPR000157 GO:0007165
Seca3g10242 1369 SMART till_3 488 632 IPR000157 GO:0007165
Seca3g10242 1369 SUPERFAMILY L domain-like 967 1327 - -
Seca3g10242 1369 PRINTS Disease resistance protein signature 769 783 - -
Seca3g10242 1369 PRINTS Disease resistance protein signature 1160 1176 - -
Seca3g10242 1369 PRINTS Disease resistance protein signature 692 707 - -
Seca3g10242 1369 PRINTS Disease resistance protein signature 862 876 - -
Seca3g10242 1369 ProSiteProfiles TIR domain profile. 487 658 IPR000157 GO:0007165
Seca3g10242 1369 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 442 IPR027417 -
Seca3g10242 1369 Gene3D - 666 822 IPR027417 -
Seca3g10242 1369 Gene3D - 176 342 IPR027417 -
Seca3g10242 1369 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 489 1260 IPR044974 GO:0006952
Seca3g10242 1369 Gene3D Ribonuclease Inhibitor 1016 1354 IPR032675 -
Seca3g10242 1369 FunFam Disease resistance protein (TIR-NBS-LRR class) 7 181 - -
Seca3g10242 1369 Pfam NB-ARC domain 674 899 IPR002182 GO:0043531
Seca3g10242 1369 Pfam NB-ARC domain 193 421 IPR002182 GO:0043531
Seca3g10242 1369 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 156 IPR035897 -
Seca3g10242 1369 Gene3D - 482 665 IPR035897 -
Seca3g10242 1369 SMART AAA_5 689 829 IPR003593 GO:0016887
Seca3g10242 1369 SMART AAA_5 209 349 IPR003593 GO:0016887
Seca3g10242 1369 FunFam Disease resistance protein (TIR-NBS-LRR class) 485 660 - -
Seca3g10242 1369 FunFam Disease resistance protein (TIR-NBS-LRR class) 829 911 - -
Seca3g10242 1369 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 660 922 IPR027417 -
Seca3g10242 1369 Pfam TIR domain 489 665 IPR000157 GO:0007165
Seca3g10242 1369 Pfam TIR domain 11 175 IPR000157 GO:0007165
Seca3g10242 1369 Gene3D - 8 175 IPR035897 -
Seca3g10242 1369 ProSiteProfiles TIR domain profile. 9 179 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10242 Seca-Chr3 247017209 247028730 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10242 11 484 WRKY Transcription Factor Family AT4G12020 27.731 2.28e-44 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10242 - - aprc:113850911 1236.09