Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10241 CCAAACGTGTTCATCAATTTCAGGGGAGTAGACACTCGTAAGAACATCGTTCCTGATCTGTATACTGCCCTCTCAAATGCGAAAATCAACACTTTCCTGGGCAATGAGGAGCTTCAAGTTGGAGAGGAGCTGAAACCAGAACTATTGGAAGCAATAGAACGCTCTCAGATATCTTTAGTTGTTCTCTCTCAAAACTATACTGCATCGAGTTGGTGTCTTGAGGAACTGTTAAAAATCATGGAATGCCACAGAAATTATGCCCAGCCGGTTTTCCCCATATTTTACGGCGTTGACCCGTCGGTTGTGCGTCATCAGAAGGGTGCTTTTGGAAAAGCTTTGGAAGCAACTGCAAAAGAAAGATACTCAAGAGAGGGAGGGATGGAAGGTGTGTTGTCTAGGTGGGGGACTGCACTCACTCAAGTTGCAGGTTTCAAAGGTTGGCATGTGGATGCATCCAGATGGCATGGATTAGGTGAGCCATTACTGGAGGAAATTGTTGAATTCATTCGTACTAGAATAAGCAACCCATTGCCTATTACCGATTTTCCAGTTGGATTAGCATACCGTGTGGAACAAGTGATTCGACCAAAAAATGTTTATATAATAGGGATATGGGGAATGGGAGGATCGGGTAAAACAACCCTAGCCAAAGCCATCTACAACCAGATTCATCCCAAATTTGTGTATAGAAAATTCATCGAAAATATTAGACAAGTTTGTGATGAGGATGATAACCGGGGGCTTATTCATTTACAAGAACAACTTCTTTCACATGTCCTAAAACCAAAGGAGAAGATACATGGCATTGCCATGGGGACAGCTATGATTGAGAAAAGTCTTTCTGGAGAAAGTGCACTCGTTGTACTTGATGATGAAATGGACCAAAATGAGTCCCTTGAGCTTTTCAGTTGGCATGCTTTTAAAGAAGCAAGTCCAAGAGAAGACTTCAGGGAACTCTCAAGAAATGAAGTTGCTTACTGTGGAGGATTACCACTAGCTCTTGAAGTCCTTGGATCTTACTTATTTGACAGGACAAAACAAGAATGGAAAAGTGTATTGTCAAAACTGGAGAGAATTCCCAATGATCAAGTGCATGAGAAATTGAGAATAAGCTATGACTGTTTGGATGATACGGAAAAGGATATATTTCTTGACATTTGTTGTTTCTTTATTGGTAAGGACAGGGCCTATGTTACAGAGATACTAAATGGCTGTGGACTTTATGCTGAAATTGGAATAACCATCCTTATAGAGCGGAGCCTCGTAAAAGTTGATCAGAATAACAAGCTTGGAATGCACGATTTGCTACAAGACATGGGAAGAGAAATTGTTAATAAAAGTTCAGCAAAAGAGCCTTGGAAGCGTAGCCGATTATGGTTTCCAAAAGATGTACATGATGTTTTGACAAAAAATACTGGAACAAAAACTATTGAGGGATTGAAGTTGCAAGGGACAGGCAGTGTCAGGTTCAGTACAAATGCTTTCAAGGAAATGAAGAAACTGAGACTTTTACATCTTGATTGTGTTGACCTCACTGGAGATTATGGGTATCTTTCCAAAGAACTGAGATGGGTCAATTGGCAACGATCTACCTTCAGATATATACCTGACGACTTTGATCTCAGACATCTAGTTGTTCTTGACTTACAATACAGCAATATTCAACAAGTTTGGAAGGAAACCAAGGTATAA 1692 0.4043 PNVFINFRGVDTRKNIVPDLYTALSNAKINTFLGNEELQVGEELKPELLEAIERSQISLVVLSQNYTASSWCLEELLKIMECHRNYAQPVFPIFYGVDPSVVRHQKGAFGKALEATAKERYSREGGMEGVLSRWGTALTQVAGFKGWHVDASRWHGLGEPLLEEIVEFIRTRISNPLPITDFPVGLAYRVEQVIRPKNVYIIGIWGMGGSGKTTLAKAIYNQIHPKFVYRKFIENIRQVCDEDDNRGLIHLQEQLLSHVLKPKEKIHGIAMGTAMIEKSLSGESALVVLDDEMDQNESLELFSWHAFKEASPREDFRELSRNEVAYCGGLPLALEVLGSYLFDRTKQEWKSVLSKLERIPNDQVHEKLRISYDCLDDTEKDIFLDICCFFIGKDRAYVTEILNGCGLYAEIGITILIERSLVKVDQNNKLGMHDLLQDMGREIVNKSSAKEPWKRSRLWFPKDVHDVLTKNTGTKTIEGLKLQGTGSVRFSTNAFKEMKKLRLLHLDCVDLTGDYGYLSKELRWVNWQRSTFRYIPDDFDLRHLVVLDLQYSNIQQVWKETKV. 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10241 563 Gene3D - 188 252 IPR027417 -
Seca3g10241 563 SMART till_3 1 144 IPR000157 GO:0007165
Seca3g10241 563 PRINTS Disease resistance protein signature 201 216 - -
Seca3g10241 563 PRINTS Disease resistance protein signature 327 341 - -
Seca3g10241 563 PRINTS Disease resistance protein signature 539 555 - -
Seca3g10241 563 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 386 IPR027417 -
Seca3g10241 563 Gene3D - 1 177 IPR035897 -
Seca3g10241 563 SUPERFAMILY L domain-like 480 558 - -
Seca3g10241 563 SUPERFAMILY "Winged helix" DNA-binding domain 363 468 IPR036390 -
Seca3g10241 563 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2 291 IPR044974 GO:0006952
Seca3g10241 563 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 147 IPR035897 -
Seca3g10241 563 Pfam NB-ARC domain 199 295 IPR002182 GO:0043531
Seca3g10241 563 Pfam TIR domain 3 152 IPR000157 GO:0007165
Seca3g10241 563 Gene3D Ribonuclease Inhibitor 460 561 IPR032675 -
Seca3g10241 563 FunFam Disease resistance protein (TIR-NBS-LRR class) 1 175 - -
Seca3g10241 563 ProSiteProfiles TIR domain profile. 1 173 IPR000157 GO:0007165
Seca3g10241 563 Gene3D - 292 376 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10241 Seca-Chr3 247003981 247006336 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10241 190 562 WRKY Transcription Factor Family AT5G45050 29.978 2.75e-52 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10241 - - cam:101511388 692.96