Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10240 ATGAAAGCAATTGTTGTCACCATTTTTCCCAAAGCCAAAGCCAAAGCCATCTACAATCAAATTCATCGCAAATTTGTGTTTAGAAAATTCATTGAAAATATTAGAGAGGTTTGTGAGGAAGATATTAGAGGGCATATTCACTTACAAGAACAACTTCTTTCACATGTCCTAGAAGTACCAAAGGAGAAGATACATAGCATCGCGATTGGGACAACTATGATCCAGAAAAGACTTTCCGGAAAAAAGGCACTTGTTGTACTTGATGACGTGACCACATTTCAGCAATTAAAAGCCCTCTGTGGAAATCGTAAATGGTTTGGTGCAGGAACTGTAGTAATTGTTACAACCAGAGATGAACGCCTACTTAATTTACTTAAAGTTGACCATATCTGTAGATCCAAGGAAATGAACAAAAATGAGTCTCTTGAACTTTTCAGTTGGCATGCTTTTAGAGAAGCAAGTCCAAGACAAGACTTCTCTAGTCTCTCAAGAAACGTAGTTGCTTACTGTGGAGGACTACCACTAGCTCTTGAAGTCCTTGGATCTTACTTATGTGACAGGACAAAAGGAGAATGGAAAAGTGTATTGTCAAAACTAAAGAGAATTCCTAATGATCAAGTGCAAGAGAAATTGAGAATAAGCTATGATGGTTTGGATGACATTGAAAAGGATATATTTCTTGACATTTGTTGTTTCTTCATTGGTAAGGACAGAGCCTATGTTACAGAAATACTAAATGGCTGTGAACTTTATGCTGATATTGGAATAACAGTGCTCATAGAGCGGAGCCTCGTAAAAGTTGAAAAGAAGAACAAGCTTGGAATGCATGATTTGGTACGAGACATGGGAAGAGAAATTATTCGTAAAAGTTCACCACAAAAGCCTGAGAAACGTACTCGATTGTGGTTTCACGAGGATGTACAAGATGTTTTGGCGAAAAACACTGGAACTAAAACTATTAAGGGATTGAAGTTGCAAGGAAAAGGCAGAGTTCACTTCAGTACTAATGCTTTCAAGAAAATGAAGAAACTGAGACTTTTACAACTTGATTGTGTTAACCTCACTGGAGACTATGGGTATCTTTCCAAAGAACTGAGATGGGTCAATTGGCAACGATCTACCTTCAGATATATACCTGATGACTTTGATCTGGGACATCTAGTTGTTCTTGACTTAAAATACAGCAATATTGAACAAGTTTGGAAGGAAACCAAGTTGCTGGAGAAGCTAAAAATCCTCAATCTCAGTCATTCTAGGTACTTGGAAAACACCCCTGACTTTTCCAAACTACCAAATCTAGAAAAGCTCATTCTGAAGGATTGTCCGAGTTTGTCAAAGGTACACGAGTCCATTGGAGATCTCAGTAATCTTGTTCTGATAAATTTGAAGGACTGTACAAGGCTTAGCAATCTCCCAAGGAAGATCTATAAGTTAAAAACTGTGAAAACTCTCATCCTTTCTGGTTGTTCAAAGATTGACAAATTGGAAGAAGATATAGTGCAGATGGAATCCTTGACAACATTGATTGCAAAAGACACAGCTATAAAAGAAGTGCCCTATTCAATAATAAGATCAAAAAGCATTGGATATATATCCCTATGTGGATATGAAGGATTATCACGTGATGTTTTTCCTTCCCTCATTTGGTCTTGGATGTCACCCACAATGAATTCCCTACCCCGCATTCACCAATTTGAGAGCATGTCATTGTCATCATCTCTAGTTTCCGTGAATAATGCAGAGAACAATAATTTGGGCAATCTATCACCGATACTTAGCAGGCTTTCAAAACTTAGAAGCTTTTGGGTACAATGCCGATCAGAGATTCAACTAACTCAGGAATTAAGAAGATTTCTTGATGATTTATATGACAGAAATTTTACTGAAATGGAAACAACGGCACATGCATCACAAATCTCAGATCTTTCCTTGAAATCGCTTTTGATTGGAATGGGAAGTTACCATGGTGTCGTTGATGCTCTTGGCAAGACCATATCACAGGGATTGACAACCAATGATTCTAGTAATATTTTCCTTCCGGGTGACAATTATCCTTCTTGGTTAGCCTATAAAGGTGAAGGACCTTCAGTACATTTTCAAGTACCTGAGGACAGTGATTGTCGCAAAAAGGGAATAATTTTGTGTGTAGTTTACGCATCAACACCTGAAAACATGGCAGATGGATGTCTGAGTAGTGTCTTAATCATTAATTACACAAAGTTAACCATCCAGATATACAAGCGAGACACAGTAATGTCCTTTAATGATGAAAATTGGCAGTGTGTAATATCCAATCTAGGAGCTGGTGACAGTGTGGAGATTCTTTTAGCTTTTGGGCATGGATTGATTGTTAAGGAGATAGCTGTCTATCTAATATATGACCAGTCAATTACTATGGAAATTGAGTCGTTAAGTATTATGGAAGTTGAGCTATCAACTAACATGAAAATGGATCCATTGCCTGAACCTGAAGTGGATGAGCAGCCATCACCTAATGTGAAAATGGAGCCTTGTCATGATGTAGAAACTGAGCCATCACTTAAGCCAAATAAAAATATCTTTGCACGACTTAAAAAGAGAATGGGAGAATGTTTATGCTTGAACCACAAATCGATTTGA 2619 0.3765 MKAIVVTIFPKAKAKAIYNQIHRKFVFRKFIENIREVCEEDIRGHIHLQEQLLSHVLEVPKEKIHSIAIGTTMIQKRLSGKKALVVLDDVTTFQQLKALCGNRKWFGAGTVVIVTTRDERLLNLLKVDHICRSKEMNKNESLELFSWHAFREASPRQDFSSLSRNVVAYCGGLPLALEVLGSYLCDRTKGEWKSVLSKLKRIPNDQVQEKLRISYDGLDDIEKDIFLDICCFFIGKDRAYVTEILNGCELYADIGITVLIERSLVKVEKKNKLGMHDLVRDMGREIIRKSSPQKPEKRTRLWFHEDVQDVLAKNTGTKTIKGLKLQGKGRVHFSTNAFKKMKKLRLLQLDCVNLTGDYGYLSKELRWVNWQRSTFRYIPDDFDLGHLVVLDLKYSNIEQVWKETKLLEKLKILNLSHSRYLENTPDFSKLPNLEKLILKDCPSLSKVHESIGDLSNLVLINLKDCTRLSNLPRKIYKLKTVKTLILSGCSKIDKLEEDIVQMESLTTLIAKDTAIKEVPYSIIRSKSIGYISLCGYEGLSRDVFPSLIWSWMSPTMNSLPRIHQFESMSLSSSLVSVNNAENNNLGNLSPILSRLSKLRSFWVQCRSEIQLTQELRRFLDDLYDRNFTEMETTAHASQISDLSLKSLLIGMGSYHGVVDALGKTISQGLTTNDSSNIFLPGDNYPSWLAYKGEGPSVHFQVPEDSDCRKKGIILCVVYASTPENMADGCLSSVLIINYTKLTIQIYKRDTVMSFNDENWQCVISNLGAGDSVEILLAFGHGLIVKEIAVYLIYDQSITMEIESLSIMEVELSTNMKMDPLPEPEVDEQPSPNVKMEPCHDVETEPSLKPNKNIFARLKKRMGECLCLNHKSI. 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10240 872 Pfam NB-ARC domain 65 211 IPR002182 GO:0043531
Seca3g10240 872 PRINTS Disease resistance protein signature 77 91 - -
Seca3g10240 872 PRINTS Disease resistance protein signature 170 184 - -
Seca3g10240 872 PRINTS Disease resistance protein signature 405 421 - -
Seca3g10240 872 FunFam Disease resistance protein (TIR-NBS-LRR class) 137 219 - -
Seca3g10240 872 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 229 IPR027417 -
Seca3g10240 872 Gene3D Ribonuclease Inhibitor 304 647 IPR032675 -
Seca3g10240 872 SUPERFAMILY L domain-like 275 603 - -
Seca3g10240 872 Gene3D - 135 219 IPR042197 -
Seca3g10240 872 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 527 IPR044974 GO:0006952
Seca3g10240 872 Gene3D - 12 130 IPR027417 -
Seca3g10240 872 MobiDBLite consensus disorder prediction 821 843 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10240 Seca-Chr3 246999694 247003943 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10240 39 522 WRKY Transcription Factor Family AT4G12020 33.333 3.48e-67 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10240 - - tpra:123923853 1152.89