Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10235 ATGGCTTCTTCATCCTCAAATTCCAATCCCCAATGGATCTACGATGTGTTCATCAATTTCAGGGGAGTAGACACTCGCAAGAACTTAGTTCGTGACCTCTATGCCGCGCTCTCAAATGCCGGAGTCAACACTTTCGTTGACCACAGGATTCGCAAGGGAACAGAGCTGAAACCAGAACTAGTTCGAGCAATAGAAGGGTCTCAGATATCTTTAGTTGTTCTCTCCCAAAACTATATTGGATCTAGTTGGTGTCTTGATGAACTGGTAAAAATCATGGAATGCCGCAGAACTTATGGCCAGGTGGTTGTGCCCATATTTTACCGCGTTGATCCATCGGTCGTGCGTAATCAGACTGGTGCATTTGGAGAAACTTTGAAAGCAATGGCCACAAAAAGATACTCAGGGGAACTGATGATTCATGTGTTGTTAGGGTGGAGACGTGCTCTCACCGAAGCTGCAAATTTGTCTGGTTGGGATGCGACGGCATTCAGGCATGATGGTAAACTAGTGGAGCAAATTGTTGAGCACGTTTTGACAACAATATTTCACCCATTGCCTATTACTGAATTTCCGGTTGGATTAGAATACCGTGTGGAACAAGTGATTCGGTTGATTGAAAATCATTCAAGCGAGGTTTGTATAATAGGGATATGGGGAATGGGAGGATCCGGTAAAACAACCATAGCCAAAGCCATCTACAATCAAATTCATCGCAAATTTGTGTTTAGAAAATTCATTGAAAATATTAGAGAGGTTTGTGAGGAAGATATTAGAGGGCATATTCACTTACAAGAACAACTTCTTTCACATGTCCTAGAAGTACCAAAGGAGAAGATACATAGCATCGCGATTGGGACAACTATGATCCAGAAAAGACTTTCCGGAAAAAAGGCACTTGTTGTACTTGATGACGTGACCACATTTCAGCAATTAAAAGCCCTCTGTGGAAATCGTAAATGGTTTGGTGCAGGAACTGTAGTAATTGTTACAACCAGAGATGAACGCCTACTTAATTTACTTAAAGTTGACCATATCTGTAGATCCAAGGAAATGAACAAAAATGAGTCTCTTGAACTTTTCAGTTGGCATGCTTTTAGAGAAGCAAGTCCAAGACAAGACTTCTCTAGTCTCTCAAGAAACGTAGTTGCTTACTGTGGAGGACTACCACTAGCTCTTGAAGTCCTTGGATCTTACTTATGTGACAGGACAAAAGGAGAATGGAAAAGTGTATTGTCAAAACTAAAGAGAATTCCTAATGATCAAGTGCAAGAGAAATTGAGAATAAGCTATGATGGTTTGGATGACATTGAAAAGGATATATTTCTTGACATTTGTTGTTTCTTCATTGGTAAGGACAGAGCCTATGTTACAGAAATACTAAATGGCTGTGAACTTTATGCTGATATTGGAATAACAGTGCTCATAGAGCGGAGCCTCGTAAAAGTTGAAAAGAAGAACAAGCTTGGAATGCATGATTTGGTACGAGACATGGGAAGAGAAATTATTCGTAAAAGTTCACCACAAAAGCCTGAGAAACGTACTCGATTGTGGTTTCACGAGGATGTACAAGATGTTTTGGCGAAAAACACTGGAACTAAAACTATTAAGGGATTGAAGTTGCAAGGAAAAGGCAGAGTTCACTTCAGTACTAATGCTTTCAAGAAAATGAAGAAACTGAGACTTTTACAACTTGATTGTGTTAACCTCACTGGAGACTATGGGTATCTTTCCAAAGAACTGAGATGGGTCAATTGGCAACGATCTACCTTCAGATATATACCTGATGACTTTGATCTGGGACATCTAGTTGTTCTTGACTTAAAATACAGCAATATTGAACAAGTTTGGAAGGAAACCAAGTTGCTGGAGAAGCTAAAAATCCTCAATCTCAGTCATTCTAGGTACTTGGAAAACACCCCTGACTTTTCCAAACTACCAAATCTAGAAAAGCTCATTCTGAAGGATTGTCCGAGTTTGTCAAAGGTACACGAGTCCATTGGAGATCTCAGTAATCTTGTTCTGATAAATTTGAAGGACTGTACAAGGCTTAGCAATCTCCCAAGGAAGATCTATAAGTTAAAAACTGTGAAAACTCTCATCCTTTCTGGTTGTTCAAAGATTGACAAATTGGAAGAAGATATAGTGCAGATGGAATCCTTGACAACATTGATTGCAAAAGACACAGCTATAAAAGAAGTGCCCTATTCAATAATAAGATCAAAAAGCATTGGATATATATCCCTATGTGGATATGAAGGATTATCACTTTGGTCTTGGATGTCACCCACAATGAATTCCCTACCCCGCATTCACCAATTTGAGAGCATGTCATTGTCATCATCTCTAGTTTCCGTGAATAATGCAGAGAACAATAATTTGGGCAATCTATCACCGATACTTAGCAGGCTTTCAAAACTTAGAAGCTTTTGGGTACAATGCCGATCAGAGATTCAACTAACTCAGGAATTAAGAAGATTTCTTGATGATTTATATGACAGAAATTTTACTGAAATGGAAACAACGGCACATGCATCACAAATCTCAGATCTTTCCTTGAAATCGCTTTTGATTGGAATGGGAAGTTACCATGGTGTCGTTGATGCTCTTGGCAAGACCATATCACAGGGATTGACAACCAATGATTCTAGTAATATTTTCCTTCCGGGTGACAATTATCCTTCTTGGTTAGCCTATAAAGGTGAAGGACCTTCAGTACATTTTCAAGTACCTGAGGACATTGATTGTCGCAAAAAGGGAATAATTTTGTGTGTAGTTTATTCATCATCACCTGAAAACATTGCAAATGAATGTCTGTGTAGTGTCTTAATCATTAATTACACAAAGTTAACCATCCATATATACAAGCGAGACACAGTAATGTCCTTTAATGATGAAGATTGGCAGAGTGTAATATCCAATCTAGGAGCTGGTGACAGTGTGGAGATTCTTTTAGCTTTTGGGCATGGATTGATTGTTAAGGAGATAGCTATCTATCTAATATATGACCAGTCAATTACTATGGAAATTGAGTCGTTAAGTATTATGGAAGTTGAGCCATCAACTAACATGAAAGTGGATCCATTGCCTGAACCTGAAGTGGATGAGCAGCTATCACCTAATGTGAATATGGAGCCATCACCTGAAATGGACGGGAAACCATCACCTAATGTGAAAATGGAGCGTTCTCATGATGTAGAAACTGAGCCATCACCAATGTCTTCTTCATCCTCAAAACCTAAATGGATATACGACGTGTTCATCAATTTCAGGGGAGAAGACACTCGCCGGAATTTCGTTTCTCATCTGCACGCCGCCCTCTCCAATGCGGGAATCAACACTTTCCTTGACGACGAGAAGCTTATAAAAGGAGGTCAACTTGGACCAGAGCTAATGCGAGCAATAGAAGGCTCTCAGATATTTATCGTCGTTTTGTCTCAAAACTACATCAAATCTAGTTGGTGTCTCGATGAACTGGTTAAAATCATGGAATGCCACGGAACTAATGGCCAGGTGGTTGTTTTGCCTGTATTTCACTACGTTGACCCTTCAGTTGTGCGTTATCAGACGGGTGACTTTGGACAAACTCTGCTATCAACTGGTAAGAAAAGACACCCAGGGGATGGTACCATCTATTTGGTGTCCAGATGGAGGACCGCACTCACTCAACTTGCATATTTGACTGGTTGGGATACCTCTAATTTCAGGAATGAAGCTGAACTAGTTGAGAAAATTCTTCAGGACGTTTCTACAAAACTAGACATCTCATTTTTGTCTATTACCGGATTCCCTGTTGGATTAGAGTCCCGTGTTCAACAAGTCACCGAGTTTATTCAAAACCAATCAAGTAAAGAGGTTTCTAATTGTATAGTAGGGATCTGGGGAATGGGAGGGTCCGGTAAAACAACCCTAGCCAAAGCCATCTACAATCAAATTCATCGCCAATTTCAGGATAGGAGCTTCATTGAAAATATTAGGGAAGTTTGTGAAAGTGATTGTAAAGGGCTTATTCATTTACAACAACAACTTCTCTCTGATGTCCTCAAAACACAGGTAAAGAAGTTACATAGCATTGCACTTGGGACAACTATGATTGAGAAAAAACTTTATGGGAAAAGGGCACTGGTTATACTTGATGATGTCACCATGCTTGAGCAATTAAAAGCACTGTGTGGAAATTGTAAATGGTTTGGTTCAGGAAGTGTTTTAATTGTTACAACCAGAGATGTACGCATACTTGATTGGCTTAAAGTTGACTATGTTTGTAGAATGAAGGAGATGGACCAAAATGAGTCCCTTGAACTTTTCAGTTGGCATGCTTTTAGAGAAGCAAGTCCCAAAGAAGACTTCAGTGTACTCTCAAGAAATGTAGTTGCTTACTGTGGAGGATTGCCACTAGCTCTTGAAGTCCTTGGATCTTACTTAAATGAGAGGACAAGACGAGAATGGGAAAGTGTATTGTTGAAACTAAAGAGAATTCCCAATGATCAAGTGCAAGAGAAATTGAGAATAAGCTATGATGGTTTAAGGGATGACATGGAAAAGGATATATTTCTTGACATTTGTTGTTTCTTTATCGGCAAGGATAGAGCTTATGTTACAGAGATACTAAATGGTTGTGGCTTTTATGCTGATATTGGAATAACAGTACTCATAGAGCGGAGCCTTGTAAAAGTTGATCAGAATAACAAGCTCCAAATGCATAATTTGCTAAGAGACATGGGGAGAGAAATTGTTCGTCGAAGTTCTATAAAAGAGCCTGAGAAGCGCAGTCGATTGTGGTTTCACGAGGATGTACATGATGTTTTGACAAAAAATACTGGAACAAATACTGTTGAGGGATTGGTTTTGAAGTTGCCACAAACTGGCAGAGTTCGGTTTAGTACTAAGGCTTTCAAGGAAATGAAGAAAATGAGACTTTTACAACTTGACTTTGTTGACCTCAATGGAGAATATGGGTATCTTCCCAAACAACTTAGATGGGTTTGTTGGAAAGGATTTACGTTTAATTACATACCCGATGATTTTCATCAAGGAGATATAGTTGTTATTGACTTAAAATACAGTAATATCAGACAAGTTTGGAAGGAAACCAAGTTGTTGGAGAAGCTAAAAATTCTCAATCTTAGTCATTCCAGGTACTTGAAAAACACCCCTGAATTTTCAAAACTGCCAAATCTAGAAAAACTCATTATGAAGGATTGTCCAAGCTTATCTGAGGTACACCAGTCCATTGGAGATCTCAAAAATCTTATTTTGATAAATTTTAAAGACTGTACAAGCCTTAGCAATCTCCCAAGGAAGATCTATCAGTTGAAATCTTTGAAAACTCTCATCCTTTCTGGTTGTTCAAAGATTGACAAGTTGGAAGAAGATATAGTACAGATGGAATCCTTGACAACATTGATTGCAAAAGACACAGCTATAAAAGAAATGCCCTTTTCAATAGTAAGATCCAAAAGCATTGGATATATATCCCTATGTGGATATGAAGGATTAGCACGTAATGTATTTCCTTCTCTCATTTGGTCTTGGATGTCACCAACAAATACAATGAATCCCATGAGCATTTCATCATCTCTAGCTTTCATGGAGGTCCAGAATAATAATTTAGGTGATCTATCACCGATGATTAGTGACCTTTCAAAACTTAGAAGTGTTTGGGTGCAATGCAACACAGAGTTTCAAGTATCTCAAGCATTACAGAGTATTCTGGAAGACGCATATTTTGATGCAAAAGTTTATGATTTGTCAACAACATCGATTGCATCATCATCACAAATGTTAGACCATTCATTAAGGTTTCTTTTTATTGGAGTGGGAAGTTATTACCAGGTCCTTGATTCTCTTAGCAAGAGCGTATTAGAGGGATTAACTACTAATGGGACTAGTGACTGTTCTCTCCCCAGTGACAATTTTCCTGGTTGGTTAACCCATACTGGTGAAGGACATTCAGTACTTTTCAAAGTGCCTGATATTAAAGATTTGTTCATGAAGGGAATGATTTTGTGTGTTGTTTATTCATCAACCACTGAGAACTTGGCAGATGATTGTCTTATTAGTGTGTTGTTTGTTAATTACACAAAGTGCTCCATCCAGATATACAAGCGACACACTGCAATTTCCTTTAATGATGAGGATTGGCAGGGCATCAAATCAAATCTAGGACCTGATGACATGGTGGAGATTTGTGTTGTTTTTGGGAATGGATTGGATATCAAGAAGACAATTGTCTATCTAGTATATGATAAATAA 6252 0.3868 MASSSSNSNPQWIYDVFINFRGVDTRKNLVRDLYAALSNAGVNTFVDHRIRKGTELKPELVRAIEGSQISLVVLSQNYIGSSWCLDELVKIMECRRTYGQVVVPIFYRVDPSVVRNQTGAFGETLKAMATKRYSGELMIHVLLGWRRALTEAANLSGWDATAFRHDGKLVEQIVEHVLTTIFHPLPITEFPVGLEYRVEQVIRLIENHSSEVCIIGIWGMGGSGKTTIAKAIYNQIHRKFVFRKFIENIREVCEEDIRGHIHLQEQLLSHVLEVPKEKIHSIAIGTTMIQKRLSGKKALVVLDDVTTFQQLKALCGNRKWFGAGTVVIVTTRDERLLNLLKVDHICRSKEMNKNESLELFSWHAFREASPRQDFSSLSRNVVAYCGGLPLALEVLGSYLCDRTKGEWKSVLSKLKRIPNDQVQEKLRISYDGLDDIEKDIFLDICCFFIGKDRAYVTEILNGCELYADIGITVLIERSLVKVEKKNKLGMHDLVRDMGREIIRKSSPQKPEKRTRLWFHEDVQDVLAKNTGTKTIKGLKLQGKGRVHFSTNAFKKMKKLRLLQLDCVNLTGDYGYLSKELRWVNWQRSTFRYIPDDFDLGHLVVLDLKYSNIEQVWKETKLLEKLKILNLSHSRYLENTPDFSKLPNLEKLILKDCPSLSKVHESIGDLSNLVLINLKDCTRLSNLPRKIYKLKTVKTLILSGCSKIDKLEEDIVQMESLTTLIAKDTAIKEVPYSIIRSKSIGYISLCGYEGLSLWSWMSPTMNSLPRIHQFESMSLSSSLVSVNNAENNNLGNLSPILSRLSKLRSFWVQCRSEIQLTQELRRFLDDLYDRNFTEMETTAHASQISDLSLKSLLIGMGSYHGVVDALGKTISQGLTTNDSSNIFLPGDNYPSWLAYKGEGPSVHFQVPEDIDCRKKGIILCVVYSSSPENIANECLCSVLIINYTKLTIHIYKRDTVMSFNDEDWQSVISNLGAGDSVEILLAFGHGLIVKEIAIYLIYDQSITMEIESLSIMEVEPSTNMKVDPLPEPEVDEQLSPNVNMEPSPEMDGKPSPNVKMERSHDVETEPSPMSSSSSKPKWIYDVFINFRGEDTRRNFVSHLHAALSNAGINTFLDDEKLIKGGQLGPELMRAIEGSQIFIVVLSQNYIKSSWCLDELVKIMECHGTNGQVVVLPVFHYVDPSVVRYQTGDFGQTLLSTGKKRHPGDGTIYLVSRWRTALTQLAYLTGWDTSNFRNEAELVEKILQDVSTKLDISFLSITGFPVGLESRVQQVTEFIQNQSSKEVSNCIVGIWGMGGSGKTTLAKAIYNQIHRQFQDRSFIENIREVCESDCKGLIHLQQQLLSDVLKTQVKKLHSIALGTTMIEKKLYGKRALVILDDVTMLEQLKALCGNCKWFGSGSVLIVTTRDVRILDWLKVDYVCRMKEMDQNESLELFSWHAFREASPKEDFSVLSRNVVAYCGGLPLALEVLGSYLNERTRREWESVLLKLKRIPNDQVQEKLRISYDGLRDDMEKDIFLDICCFFIGKDRAYVTEILNGCGFYADIGITVLIERSLVKVDQNNKLQMHNLLRDMGREIVRRSSIKEPEKRSRLWFHEDVHDVLTKNTGTNTVEGLVLKLPQTGRVRFSTKAFKEMKKMRLLQLDFVDLNGEYGYLPKQLRWVCWKGFTFNYIPDDFHQGDIVVIDLKYSNIRQVWKETKLLEKLKILNLSHSRYLKNTPEFSKLPNLEKLIMKDCPSLSEVHQSIGDLKNLILINFKDCTSLSNLPRKIYQLKSLKTLILSGCSKIDKLEEDIVQMESLTTLIAKDTAIKEMPFSIVRSKSIGYISLCGYEGLARNVFPSLIWSWMSPTNTMNPMSISSSLAFMEVQNNNLGDLSPMISDLSKLRSVWVQCNTEFQVSQALQSILEDAYFDAKVYDLSTTSIASSSQMLDHSLRFLFIGVGSYYQVLDSLSKSVLEGLTTNGTSDCSLPSDNFPGWLTHTGEGHSVLFKVPDIKDLFMKGMILCVVYSSTTENLADDCLISVLFVNYTKCSIQIYKRHTAISFNDEDWQGIKSNLGPDDMVEICVVFGNGLDIKKTIVYLVYDK. 2084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10235 2083 SUPERFAMILY L domain-like 490 811 - -
Seca3g10235 2083 SMART AAA_5 211 352 IPR003593 GO:0016887
Seca3g10235 2083 SMART AAA_5 1286 1427 IPR003593 GO:0016887
Seca3g10235 2083 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 744 IPR044974 GO:0006952
Seca3g10235 2083 Gene3D - 1253 1419 IPR027417 -
Seca3g10235 2083 Gene3D - 178 345 IPR027417 -
Seca3g10235 2083 ProSiteProfiles TIR domain profile. 12 181 IPR000157 GO:0007165
Seca3g10235 2083 SUPERFAMILY "Winged helix" DNA-binding domain 1496 1602 IPR036390 -
Seca3g10235 2083 FunFam Disease resistance protein (TIR-NBS-LRR class) 1079 1254 - -
Seca3g10235 2083 Gene3D - 11 177 IPR035897 -
Seca3g10235 2083 PRINTS Disease resistance protein signature 1769 1785 - -
Seca3g10235 2083 PRINTS Disease resistance protein signature 1367 1381 - -
Seca3g10235 2083 PRINTS Disease resistance protein signature 1460 1474 - -
Seca3g10235 2083 PRINTS Disease resistance protein signature 1289 1304 - -
Seca3g10235 2083 MobiDBLite consensus disorder prediction 1023 1076 - -
Seca3g10235 2083 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 444 IPR027417 -
Seca3g10235 2083 Gene3D Ribonuclease Inhibitor 1624 1937 IPR032675 -
Seca3g10235 2083 SUPERFAMILY Toll/Interleukin receptor TIR domain 1072 1229 IPR035897 -
Seca3g10235 2083 FunFam Disease resistance protein (TIR-NBS-LRR class) 352 434 - -
Seca3g10235 2083 Pfam TIR domain 1083 1255 IPR000157 GO:0007165
Seca3g10235 2083 Pfam TIR domain 14 178 IPR000157 GO:0007165
Seca3g10235 2083 Gene3D - 350 434 IPR042197 -
Seca3g10235 2083 Gene3D - 1425 1509 IPR042197 -
Seca3g10235 2083 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1255 1520 IPR027417 -
Seca3g10235 2083 ProSiteProfiles TIR domain profile. 1081 1252 IPR000157 GO:0007165
Seca3g10235 2083 Pfam NB-ARC domain 1270 1501 IPR002182 GO:0043531
Seca3g10235 2083 Pfam NB-ARC domain 195 426 IPR002182 GO:0043531
Seca3g10235 2083 Gene3D Ribonuclease Inhibitor 519 856 IPR032675 -
Seca3g10235 2083 SMART till_3 13 155 IPR000157 GO:0007165
Seca3g10235 2083 SMART till_3 1082 1226 IPR000157 GO:0007165
Seca3g10235 2083 Gene3D - 1080 1252 IPR035897 -
Seca3g10235 2083 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 158 IPR035897 -
Seca3g10235 2083 FunFam Disease resistance protein (TIR-NBS-LRR class) 10 182 - -
Seca3g10235 2083 SUPERFAMILY L domain-like 1615 1898 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10235 Seca-Chr3 246966882 246981015 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10235 14 737 WRKY Transcription Factor Family AT4G12020 30.821 3.52e-84 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10235 - - aprc:113850721 2164.81