LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g10233	ATGTCATTTTCATCTTCATCCTCCTCCAATCATCAATGGATCTACGACGTGTTCATCAATTTCAGGGGAGTAGACACTCGTAGGAAATTCGTCTCTCATCTCTATGCTGCCCTCTCAAATGCCGGAATCAACACTTTTCTGGACAACGAGGAGCTTGAAAAGGGACAAGAGCTGAAACCAGAACTATTGCGAGCAATAGAAGGCTCTCAGATATCTTTAGTTGTTCTCTCTCAGAACTATGCTGGATCTAGTTGGTGTCTTGATGAACTGCTAAAAATCATGGAATGTCACAGAAGTTACGGCCAAGTGGTTATTCCCGTATTTTACGGCATTGATCCATCGGCTGTGCGTCGTCAGATTGGTGCTTTTGGAGAAGCTTTGGAAGCAACTGCAAAAGAAAGATACTCAAGAGAGGGAGGGATGAAAGATGTGTTGTCTAGGTGGAGGACTGCACTCACTCAAGTTGCAAATTTGTCTGGTTGGGATGCAAGTTTTGAAGGTAATCTAGTGGAGCAAATTGTTGAGCGCCTTTTGGCTAGAATAATCCACCCATTGCCTATTACTGAATATCCAGTTGGATTAGAATACCGTGTGGAGGAAGTGATTCGGTTTATTGAAAATCGATCTAGCAACGTTTGTTGTAAAATAGGGATATGGGGAATGGGAGGATCGGGTAAAACAACCCTAGCCAAAGCCATCTACAATCAAATTCATCCCCAATTTGTGTCTAGAAAATTCATTGAAAATATCAGAGAAGTTTGTGAAGAGGATAATAGAGGGCATATTCATTTACAAGAACAACTTCTTTCAGGTGTCTTGAAACCAAAGGAGAAGATACATAGCATTGCCATGGGGACAACTATGATTGAGAAAAGACTTTCTGGAAAAAGGGCAATCGTTGTACTTGATGATGTCACCACATTTCAGCAATTAAAAGCCTTGTGTGGAAATTGTAAATGGTTTGATCCAGGAAGTGTATTAATTGTTACCACCAGAAATGTGCGCCTTCTTAATTTACTTAAAGTTGACCATGTCTGCAAAATGAAGGAAATGGACCAAAATGAGTCCCTTGAGCTTTTCAGTTGGCATGCTTTTAGAGAAGCAAGTCCAAGAGAAGACTTCAGGGAACTCTCAAGAAGCGTAGTTGCTTACTGTGGAGGACTACCACTAGCTCTTGAAGTTATTGGATCTTACTTATGTGACAGGACAAAACAAGAATGGAAAAGTGTATTGTCAAAACTCGAGAGAATTCCCAATGATCAAGTGCAAGAGAAATTGAGAATAAGCTATGATGGTTTGGATGATACAGAAAAAGATATATTTCTTGACATATGTTGTTTCTTCATTGGTAAAGGCAGAGCCTATGTTACAGAGATACTAAATGGCTGTGGACTTTATGCTGATATTGGAATAACAGTGCTCATAGAGCGCAGCCTCATAAAAGTAGAAAAGAATAACAAGCTTGGAATGCATGATTTGTTACGAGACATGGGAAGAGAAATTGTTCGTAAAAGTTCACCAGAAGATCCTGAGAAGCGTAGTCGATTGTGGTTTCACCAGGATGTACAAGATGTTTTGACAAAAAATACTGGAACAGAAGCTATTAAGGGATTGAAGCTGCAAACAAAAGGCAGAGTTTGCTTCAGTACTAATGCTTTCAAGGAAATGAAGAAACTGAGACTTATACAGTTTAATCGTGTTGACCTCACTGGAGATTATGGATATCTTTCCAGAGAACTGAGATGGATCAACTGGCAACGATCTACCTTTAGATATATACCTGATGACTTTGATCTGGAACAACTAATTGTTATTGACTTAAAATACAGCAAAGTTGAACAAGTTTGGAAGGAAACCAGGTTGTTGGAGAGGCTGAAAATTCTCAATCTCAGTCATTCCAGGTACTTGAAAAACACCCCTGACTTTTCCAAACTACCGAATTTAGAAAAACTCATTCTGAAGGATTGTCCAAGTTTGTCCGAGGTACACCAGTCCATTGGAGATCTCAGTAATCTTCTTCTGATAAATTTGACGGACTGTACTAGCCTTAGCAATCTTCCAAGGGAGATATATCAGTTGAAATCTTTGAAAACTTTAATCCTCAATGGTTGTTCAAAGATTGACAAATTAGAAGAAGATATAGAGCAGATGGAATCCTTAACAACACTGATTGCAAAAGGTACATCTGTAAAAGAAGTGCCCTATTCATTAGTAAGATCAAAAAGCATTGGATATATATCCCTGTGTGGATATGAAGGATTATCACGTGATGTTTTTCCTTCCCTCATTTGGTCTTGGATGTCACCAACAATTAATTCCCTACCCCACATCTACCCATTTGAGAGCATGTCATCATCTCTAGTCTCTGTGAATGTAGAGAACAATAATTTGGGCTATCTATCACCAATACTAAGCAGTCTTTCAAAACTTAGAACCGTTTGGGTACAATGCCACTCAGAGATTCAACTAACTCAAGAATTAAGAGGATTTCTTGATGATCTATATGACGACAATTTTACTGAATTGGAAACAACATCACATGCATCACAAATCTCAGATCTTTCCTTTGAATCGCTTTTGATTGGAATGGGAAGTTACCATGGTGTCGTTGATGCTCTTGGCAAGACCATATCACAGGGATTGACAACCAATGATTCTAGTAATATTTTCCTCCCGGATGACAATTATCCTTCTTGGTTAGCCTATAAAGGTGAAGGACCTTCAGTACATTTTCAAGTACCTGAGGACAGTGATTGTCGCAAAAAGGGAATGATTTTGTGTGTAGTTTATTCATCAACACCTGAAAACATGGCAAATGAATGTCTGAGTAGTGTCTTAATCATTAATTACACAAAGTTAACCATCCAGATATACAAGCGAGACACAGTAATGTCCTTTAATGATGAAGATTGGCAGAGTGTAATATCCAATCTAGGAGCTGGTGACAGTGTGGAGATTCTTGTAGCTTTTGGGCATGGATTGATTGTTAAGGAGATAGCTGTCTATCTAATATCTGACCAGTCAATTACTATGGAAATTGAGTCGTCAAGTAATATAGAATTTGAGCCATCAACTAACATGAAATTGGAGCCATTGCCTGAACCTGAAGTGGATGAGCAGCCATCACCTAATGTGAAGATGGAGCCTTCTCATGACATAGAAACTGAGCCATCACTGAAGCCAAATAAAAATATCTTTACAGGACTTAAAAAGAGAATGGGAGAATGTTTATGCTTGAACCACAAATAG	3249	0.3881	MSFSSSSSSNHQWIYDVFINFRGVDTRRKFVSHLYAALSNAGINTFLDNEELEKGQELKPELLRAIEGSQISLVVLSQNYAGSSWCLDELLKIMECHRSYGQVVIPVFYGIDPSAVRRQIGAFGEALEATAKERYSREGGMKDVLSRWRTALTQVANLSGWDASFEGNLVEQIVERLLARIIHPLPITEYPVGLEYRVEEVIRFIENRSSNVCCKIGIWGMGGSGKTTLAKAIYNQIHPQFVSRKFIENIREVCEEDNRGHIHLQEQLLSGVLKPKEKIHSIAMGTTMIEKRLSGKRAIVVLDDVTTFQQLKALCGNCKWFDPGSVLIVTTRNVRLLNLLKVDHVCKMKEMDQNESLELFSWHAFREASPREDFRELSRSVVAYCGGLPLALEVIGSYLCDRTKQEWKSVLSKLERIPNDQVQEKLRISYDGLDDTEKDIFLDICCFFIGKGRAYVTEILNGCGLYADIGITVLIERSLIKVEKNNKLGMHDLLRDMGREIVRKSSPEDPEKRSRLWFHQDVQDVLTKNTGTEAIKGLKLQTKGRVCFSTNAFKEMKKLRLIQFNRVDLTGDYGYLSRELRWINWQRSTFRYIPDDFDLEQLIVIDLKYSKVEQVWKETRLLERLKILNLSHSRYLKNTPDFSKLPNLEKLILKDCPSLSEVHQSIGDLSNLLLINLTDCTSLSNLPREIYQLKSLKTLILNGCSKIDKLEEDIEQMESLTTLIAKGTSVKEVPYSLVRSKSIGYISLCGYEGLSRDVFPSLIWSWMSPTINSLPHIYPFESMSSSLVSVNVENNNLGYLSPILSSLSKLRTVWVQCHSEIQLTQELRGFLDDLYDDNFTELETTSHASQISDLSFESLLIGMGSYHGVVDALGKTISQGLTTNDSSNIFLPDDNYPSWLAYKGEGPSVHFQVPEDSDCRKKGMILCVVYSSTPENMANECLSSVLIINYTKLTIQIYKRDTVMSFNDEDWQSVISNLGAGDSVEILVAFGHGLIVKEIAVYLISDQSITMEIESSSNIEFEPSTNMKLEPLPEPEVDEQPSPNVKMEPSHDIETEPSLKPNKNIFTGLKKRMGECLCLNHK.	1083

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g10233	1082	FunFam	Disease resistance protein (TIR-NBS-LRR class)	352	434	-	-
	Seca3g10233	1082	SMART	till_3	14	158	IPR000157	GO:0007165
	Seca3g10233	1082	Pfam	TIR domain	15	177	IPR000157	GO:0007165
	Seca3g10233	1082	Gene3D	-	180	345	IPR027417	-
	Seca3g10233	1082	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	180	444	IPR027417	-
	Seca3g10233	1082	Gene3D	-	350	434	IPR042197	-
	Seca3g10233	1082	Gene3D	Ribonuclease Inhibitor	520	859	IPR032675	-
	Seca3g10233	1082	FunFam	Disease resistance protein (TIR-NBS-LRR class)	11	182	-	-
	Seca3g10233	1082	SUPERFAMILY	L domain-like	490	816	-	-
	Seca3g10233	1082	Gene3D	-	8	179	IPR035897	-
	Seca3g10233	1082	PRINTS	Disease resistance protein signature	215	230	-	-
	Seca3g10233	1082	PRINTS	Disease resistance protein signature	691	707	-	-
	Seca3g10233	1082	PRINTS	Disease resistance protein signature	385	399	-	-
	Seca3g10233	1082	PRINTS	Disease resistance protein signature	292	306	-	-
	Seca3g10233	1082	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	15	800	IPR044974	GO:0006952
	Seca3g10233	1082	MobiDBLite	consensus disorder prediction	1022	1062	-	-
	Seca3g10233	1082	SUPERFAMILY	Toll/Interleukin receptor TIR domain	4	161	IPR035897	-
	Seca3g10233	1082	Pfam	NB-ARC domain	195	423	IPR002182	GO:0043531
	Seca3g10233	1082	ProSiteProfiles	TIR domain profile.	13	181	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g10233	Seca-Chr3	246958255	246962909	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g10233	15	737	WRKY Transcription Factor Family	AT4G12020	29.973	2.96e-84	298

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g10233	-		-	tpra:123923836	1331.24