LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g10232	ATGTATGGACGCCAATGGATATACGACGTGTTCATCAATTTCAGGGGACAAGACACTCGTCAAAATTTCGTTTCCCATCTCTATGCTGCCCTCTCAAATGCGGGAGTCAACATCTTTCTCGACGATGAGAAGCTTGAAAGGGGAGAGGAGCTGAAAGAAACATTATGTCAAGCAATACGAGGGTCTCGTATATCTCTGGTTGTTTTCTCCGAAACCTATGCTGAATCTTCTTGGTGTCTTTACGAGCTGCAAAATATCACGAAATGCCACACAACTTATGGCCAGGTGGTTATACCTATATTTTACCATGTTGACCCATCGGATGTACGTCATCGGAAAGGTGCTTTTGGAGAAGCTTTGAAAACACTCTCCGCAACAAAATCAGGATTGGCGACATGGGGGTATGACCTCACTCAAGCTGCAAATTTGTCTGGTTGGGATGTGAGACATTGGAGGAGTGAAGCTGAATTAGTGAAGAAAATTGTTGAGGATGTTTTGACAAAACTTGACATCACACTCTTATCTACCACTGAATTTCTGGTTGGATTAGAATCTCGTGTGCAAGAAGTGATTCGATTGATTACAGATCGTTCAAGCAAAGTTTGTATAGTCGGGATTTGGGGAATGGGAGGGTCGGGTAAGACAACCACAGCCAAAGCCATCTACAATCAAATTCAACGCAAATTTGATGATAAGAGTTTCATTGAAAATATTAGGGAAGTTTGTGAAAATGATAAAGGAGGGTATATTCATTTACAGAAACAACTTCTTTCAGATATCCTAAAAACAAAGGTGAAGATCCAAAGTATTGCGTCGGGGACAATTAAGATTCAGAAAAGTCTTTGTGTGAGAAGGATGCTAGTTGTATTAGATGATATAAACAAGCTTGAGCAATTGAAAACCTTATGTGGGAACCGTAACTGGTTTGGTCCAGGAAGTTTATTAATTGTTACAACCAGAGATGTGCGCCTTCTTAATTTACTTAAAGTTGACCATGTCTATAAAATGGAGGAAATGGACACAAATGAGTCCCTTGAGCTTTTCAGTTGGCATGCTTTTAGAGAATCAAGTCCAACAGAAGACTTCAGTGAACTCTCAAAAAGTGTAGTTGCTTACTGTGGGGGATTACCACTAGCTCTTGAAGTTATTGGATCTTACTTATATGAAAGGACAAAACCAGAATGGAGCAGTGTGATATTAAAACTAGGAAGAATTCCACATGATCAAGTGCAAGAGAAGTTGAGAATGAGCTATGATGGTTTAAAGGATGATATGGAAAAGGATATATTTCTTGACATTTGTTGTTTCTTCATTGGTAAGGACAGAGCCTATGTTACAGAGATACTAAATGGCTGTAGCTTTTATGCTGATATTGGAATAACAGTCCTCATTGAGCGGAGCCTCTTAAAAGTTGAAAAAAATAACAAGCTTGGAATGCATAATTTGCTACGAGACATGGGAAGAGAAATTGTTCGTCAAAGTTCAATGAAAGAGCCTGGGAAGCGTAGTCGATTATGGTTTCACGAGGATGTACATGATGTTTTGACAAAAAAAACTGGAACAGAAACTATTGAGGGATTGAAGTTGCAAAGAACAGGCAGAGTCAGGTTTAGTACTAATGCTTTCAAGGAAATGAATACACTGAGACTTTTACATCTTGATTGTGTTGATCTCACTGGAGATTATGGGTATCTTTCCAAAGAACTGAGATGGGTCAATTGGCAACGATCTACCTTCAGATGTATACCTGATGACTTTGATCTTGGACATCTAGTTGTTATTGACTTAAAATACAGCAATATTAAACAACTTTGGAAGGAAACCAAGATGCTGGGGAAGCTGAAAATCCTCAATCTCAGTCATTCTAGGTACATGAAAAACACCCCTGACTTTTCCAAACTACCAAATCTAGAAAAACTCATTCTGAAGGATTGTCCAAGTTTGTCCGAGGTACATGAGTCCATTGGAGATCTCAAAAATCTTATTTTGATAAATTTGAAGGACTGTACAAGCCTTAGCAATCTCCCAAGGAAGATCTATAAGTTAAAATCTGTGCAAACCTTGATCCTTTCTGGTTGTTCAAAGATTGACAAGTTAGAAGAAGATATAGTGCAGATGGAATCCTTGACAACACTGATTGCTAAAGGTACAGCTGTAAAAGAAGTGCCTCATTCAATAGTAAGATCAAAAAGCATTGGATATATATCCCTATGTGGATATGAAGGATTATCACGTGATGTTTTTCCTTCTCTCATTTGGTCTTGGACGTCACCAACAATGAATCCCTTCTCCCATATTCATCCATTTGACGGCATGTTATCGTCTCTAGTATCCGTGAATGTAGAGAACAATAATTTGGGCAATCTATCACCAATACTTAGCAGCCTTTCAAAACTTAGAAGCTTTTGGGTACAATGCCGATCAGAGGTTGAACTAACTCAGCAATTAAGAAGTTTACTTGATGATTTATATGACAGAAATTTTACTGAAATGGAAACAACGGCACATGCAACACTAGTCTCAAATCTTTCCTTGAGATCACTTTTGATTGGAATGGGAAGTTACCATGGTGTCGTTGATGCTCTTGGCAAGACCATATCACAGGGATTGACAACCAATGATTCCAGTAATATTTTCCTTCCGGGTGACAATTATCCTTCTTGGTTAGCCTATAAAGGTGAAGGACCTTCAGTACATTTTCAAGTACCTGAGGACAGTGATTGTGGCAAAAAGGGAATAATTTTGTGTGTAGTTTATTCATCAACACCTGAAAACATGGCAGATGGATGTCTGAGTAGTGTCTTAATCATTAATTACACAAAGTTAACCATCCAGATATACAAGCGAGACACAGTAATGTCCTTTAATGATGAAGATTGGCAGGGTGTGATATCAAATCTAGGAGCTGGTGACACTGTGGAGATTCTTGTAGCTTTTGGGCATGGATTGATTGTTAAGAAAACAGCTGTCTATCTAATATCTGACCAGTCAATTACTGTGGAAATTGAGCCATCAAACAATATAGAAGTTGAGCCATTCACTAACAAGAAAATGGAGTTGTTGCCTGCAGTTGATGTGCAGCCATCACCTAATGTCAAAACGGAGTCATCACCAGAAGTGAACGTGCAGCCATCACCTAATGTGAAAATGGAGCCATTTCCTCAAGTGGACGAGCAACCATCACCTAATGTGAAAATGGAGCCTTTTCATGACACAGAAACTGAGCCATCATTGAAGCCAAATAAAAATACCTTTACAAGACTTAAAAAGAGAATGGGAGAATGTTTGTGCTTGAACCAGAAATAG	3306	0.3875	MYGRQWIYDVFINFRGQDTRQNFVSHLYAALSNAGVNIFLDDEKLERGEELKETLCQAIRGSRISLVVFSETYAESSWCLYELQNITKCHTTYGQVVIPIFYHVDPSDVRHRKGAFGEALKTLSATKSGLATWGYDLTQAANLSGWDVRHWRSEAELVKKIVEDVLTKLDITLLSTTEFLVGLESRVQEVIRLITDRSSKVCIVGIWGMGGSGKTTTAKAIYNQIQRKFDDKSFIENIREVCENDKGGYIHLQKQLLSDILKTKVKIQSIASGTIKIQKSLCVRRMLVVLDDINKLEQLKTLCGNRNWFGPGSLLIVTTRDVRLLNLLKVDHVYKMEEMDTNESLELFSWHAFRESSPTEDFSELSKSVVAYCGGLPLALEVIGSYLYERTKPEWSSVILKLGRIPHDQVQEKLRMSYDGLKDDMEKDIFLDICCFFIGKDRAYVTEILNGCSFYADIGITVLIERSLLKVEKNNKLGMHNLLRDMGREIVRQSSMKEPGKRSRLWFHEDVHDVLTKKTGTETIEGLKLQRTGRVRFSTNAFKEMNTLRLLHLDCVDLTGDYGYLSKELRWVNWQRSTFRCIPDDFDLGHLVVIDLKYSNIKQLWKETKMLGKLKILNLSHSRYMKNTPDFSKLPNLEKLILKDCPSLSEVHESIGDLKNLILINLKDCTSLSNLPRKIYKLKSVQTLILSGCSKIDKLEEDIVQMESLTTLIAKGTAVKEVPHSIVRSKSIGYISLCGYEGLSRDVFPSLIWSWTSPTMNPFSHIHPFDGMLSSLVSVNVENNNLGNLSPILSSLSKLRSFWVQCRSEVELTQQLRSLLDDLYDRNFTEMETTAHATLVSNLSLRSLLIGMGSYHGVVDALGKTISQGLTTNDSSNIFLPGDNYPSWLAYKGEGPSVHFQVPEDSDCGKKGIILCVVYSSTPENMADGCLSSVLIINYTKLTIQIYKRDTVMSFNDEDWQGVISNLGAGDTVEILVAFGHGLIVKKTAVYLISDQSITVEIEPSNNIEVEPFTNKKMELLPAVDVQPSPNVKTESSPEVNVQPSPNVKMEPFPQVDEQPSPNVKMEPFHDTETEPSLKPNKNTFTRLKKRMGECLCLNQK.	1102

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g10232	1101	PRINTS	Disease resistance protein signature	203	218	-	-
	Seca3g10232	1101	PRINTS	Disease resistance protein signature	280	294	-	-
	Seca3g10232	1101	PRINTS	Disease resistance protein signature	609	625	-	-
	Seca3g10232	1101	PRINTS	Disease resistance protein signature	373	387	-	-
	Seca3g10232	1101	Gene3D	Ribonuclease Inhibitor	535	850	IPR032675	-
	Seca3g10232	1101	SUPERFAMILY	Toll/Interleukin receptor TIR domain	3	146	IPR035897	-
	Seca3g10232	1101	Gene3D	-	339	422	IPR042197	-
	Seca3g10232	1101	SUPERFAMILY	L domain-like	479	806	-	-
	Seca3g10232	1101	Gene3D	-	2	172	IPR035897	-
	Seca3g10232	1101	Pfam	TIR domain	8	176	IPR000157	GO:0007165
	Seca3g10232	1101	FunFam	Disease resistance protein (TIR-NBS-LRR class)	4	171	-	-
	Seca3g10232	1101	ProSiteProfiles	TIR domain profile.	6	169	IPR000157	GO:0007165
	Seca3g10232	1101	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	8	723	IPR044974	GO:0006952
	Seca3g10232	1101	MobiDBLite	consensus disorder prediction	1027	1085	-	-
	Seca3g10232	1101	Pfam	NB-ARC domain	186	418	IPR002182	GO:0043531
	Seca3g10232	1101	MobiDBLite	consensus disorder prediction	1029	1044	-	-
	Seca3g10232	1101	Gene3D	-	173	333	IPR027417	-
	Seca3g10232	1101	SMART	till_3	7	176	IPR000157	GO:0007165
	Seca3g10232	1101	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	171	433	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g10232	Seca-Chr3	246947808	246952875	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g10232	8	726	WRKY Transcription Factor Family	AT4G12020	31.529	1.67e-89	315

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g10232	-		-	tpra:123923859	1324.3