Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10226 ATGGGGCCAAACGCAGCGACGTTTAGACAAGCGGACCAGCTCAGAATAGACGGCAACACTTACTTTAAGAAAGACCGTTTTGGAGCTGCCATCGATGCTTACACAGAGGCAATTACGCTGTGCCCCAATGTTCCGATTTATTGGACAAATCGCGCTCTCTGTCATCTCAAGCGCAATGATTGGGAGAGAGTAGAGGAAGACTGTCGGAGAGCAATTCAGTTGGACAACAGTTCCGTTAAGGCCCACTATATGTTGGGACTTGCATTGCTCCAAAGACAAGACTATGCAAAAGGAATCAGAGAATTGGAGAAGGCTTTGGATCTTGGGAGAGGTGCCAACCCCAAGGGATATATGGTAGAAGAAATATGGCATGAACTTGCAAGGGCAAAATACCAAGAGTGGGAACGTTCATCGACCAAGCGATCATGGGAATTGCAGAGCTTGAAGTATGTTTTTCTGAGAAGCTTGTGA 471 0.4671 MGPNAATFRQADQLRIDGNTYFKKDRFGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWERVEEDCRRAIQLDNSSVKAHYMLGLALLQRQDYAKGIRELEKALDLGRGANPKGYMVEEIWHELARAKYQEWERSSTKRSWELQSLKYVFLRSL. 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10226 156 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Seca3g10226 156 Gene3D Tetratricopeptide repeat domain 3 149 IPR011990 GO:0005515
Seca3g10226 156 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 9 154 IPR045200 GO:0000209|GO:0061630
Seca3g10226 156 SMART tpr_5 45 78 IPR019734 GO:0005515
Seca3g10226 156 SMART tpr_5 11 44 IPR019734 GO:0005515
Seca3g10226 156 SMART tpr_5 79 112 IPR019734 GO:0005515
Seca3g10226 156 Pfam Anaphase-promoting complex, cyclosome, subunit 3 46 105 - -
Seca3g10226 156 Pfam Tetratricopeptide repeat 18 43 IPR019734 GO:0005515
Seca3g10226 156 ProSiteProfiles TPR repeat profile. 79 112 IPR019734 GO:0005515
Seca3g10226 156 SUPERFAMILY TPR-like 11 131 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10226 Seca-Chr3 246919491 246923287 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10226 11 149 U-box Gene Family AT3G07370 71.223 3.53e-73 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10226 K09561 - gmx:100796519 271.937