Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10225 ATGGAAGGATTTATAGATGATGCTGATACTTCCCATTTGGAACAATTAGACACTTTAAGTAGAGTTTTTAATAAAGCTGCAGAGGCTGACATACCAGCTGAGGTGCCAGATTATCTATGCTGTAGAATCACTCTTGATATTTTTCATGATCCTGTAATCACTCCAAGTGGACTTACATATGAGAGGGCAGTGATTCTTGACCATCTTCAGAAGGTGGGTAAATTTGACCCGGTCACGCGGGAACCGCTTGATCCATCACAGCTAGTACCAAACTTGGCCATTAAGGAAGCAGTCCAGGCATTCCTGGATGAACATGGGTGGGCCTACAAGGTAGACTAA 339 0.4336 MEGFIDDADTSHLEQLDTLSRVFNKAAEADIPAEVPDYLCCRITLDIFHDPVITPSGLTYERAVILDHLQKVGKFDPVTREPLDPSQLVPNLAIKEAVQAFLDEHGWAYKVD. 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10225 112 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 111 IPR013083 -
Seca3g10225 112 SMART Ubox_2 38 101 IPR003613 GO:0004842|GO:0016567
Seca3g10225 112 ProSiteProfiles U-box domain profile. 34 108 IPR003613 GO:0004842|GO:0016567
Seca3g10225 112 SUPERFAMILY RING/U-box 29 109 - -
Seca3g10225 112 CDD RING-Ubox_CHIP 35 105 IPR045202 -
Seca3g10225 112 Pfam U-box domain 35 107 IPR003613 GO:0004842|GO:0016567
Seca3g10225 112 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 9 110 IPR045200 GO:0000209|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10225 Seca-Chr3 246918551 246919450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10225 6 111 U-box Gene Family AT3G07370 70.755 1.01e-53 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10225 K09561 - gmx:100798587 207.994