Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10223 ATGAACGACAGTGACAACAGCCAAAACGGCACCTTACGAACACTCGATTTTGAAAACCTCAAAGTTATCTCTGCCGTGGGGCGCGGCGCTAAGGGTGTCGTCTTCCTCGCAAGAACCGGTGATCGGTGTTTGGCTCTGAAAGTGATCTCAAAAGCTCTGATACATCAAAAGAAGGCGAAGAACAAAAACAAGAAAAACGACAACGACGGTCCCGGCGAGTACAAGAGGGTGTCGTTTGAACAAGAAGTGCTAGGTCGTTTTGATCATCCCCTTTTGCCGCGGTTGCGAGGGGTTTTGGAAACTGAAAATGTCGTCGGCTTCGCCATTGATTATTGCCACGGTGGCAACCTCCATTCTCTTAGGAAGAAACAGACTGAGAAAATGTTCTCCGATGATACCATCAGGTTTTACGCGGCGGAATTGGTTCTCGCATTGGAATATTTGCACGAATTGGGAATAGTGTACAGGGATTTGAAGCCAGAGAACGTGATGATCCAAGAAAACGGTCACATAATGCTCATCGATTTCGATCTCTCCACCAAGCTAAACCCTAAATCCCCTCAATCACTGAGTCGTGACTCGTCAGTGAGTTCTAACTCGGCGACGGAGAATCACACGGCAAAGCGACGGCTCTCGCGATTCTACACATACTGTAACTCGGGCATCTTGCCGTGTGACTCGGACTCAGAGCCCCAACCTGCCGTCAACTCAGCGCGGCGGAGCGAGTCAGACTCAGTCGAGAAATCTAACTCGTTCGTCGGAACGGAGGAGTACGTGGCTCCTGAAATTGTATGCGGAAAGGGTCACGGTTTCAGCGTTGATTGGTGGTCATTCGGCGTCGTTTTGTACGAAATGCTATATGGAACGACGCCGTTTAAGGGGACAAGTAGGAAAGAAACGTTTTACCGGATTTTGACCAAGGAGCCGGAGCTGACGGGGGAAAAGACGGCGTTGAGGGATTTGATTGGGAGATTGCTGGAAAAGGACCCTGACCGTCGGATCCAAGTCGATGAAATCAAGGGCCATGATTTCTTCAAAGGGGTTAAGTGGGATACGGTGTTGCAAATAGCAAGGCCACCTTATATTCCTCAAATTGAGGTTGAGAATGAGAAGACAAGGGGGTTTAGAAAAAACGAAGTGGAGTTGTTTGTCCATGAGGTTTTTTTTCCCAAGTGTGATGATGATGAAGAGAAAAATAAGAAAGAGGAGGTAATGAAGGGTAACGGTGAGAATAATAATAAGATGGTGTGGGTAGACAAGTTGAGTAGTAACAGTCTTACTGAGAATGAGGATTTTTTAATTTTTTGA 1308 0.4717 MNDSDNSQNGTLRTLDFENLKVISAVGRGAKGVVFLARTGDRCLALKVISKALIHQKKAKNKNKKNDNDGPGEYKRVSFEQEVLGRFDHPLLPRLRGVLETENVVGFAIDYCHGGNLHSLRKKQTEKMFSDDTIRFYAAELVLALEYLHELGIVYRDLKPENVMIQENGHIMLIDFDLSTKLNPKSPQSLSRDSSVSSNSATENHTAKRRLSRFYTYCNSGILPCDSDSEPQPAVNSARRSESDSVEKSNSFVGTEEYVAPEIVCGKGHGFSVDWWSFGVVLYEMLYGTTPFKGTSRKETFYRILTKEPELTGEKTALRDLIGRLLEKDPDRRIQVDEIKGHDFFKGVKWDTVLQIARPPYIPQIEVENEKTRGFRKNEVELFVHEVFFPKCDDDEEKNKKEEVMKGNGENNNKMVWVDKLSSNSLTENEDFLIF. 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10223 435 FunFam Serine/threonine-protein kinase OXI1 247 364 - -
Seca3g10223 435 Pfam Protein kinase domain 22 209 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g10223 435 Pfam Protein kinase domain 247 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g10223 435 PANTHER FLIPPASE KINASE 1-RELATED 14 371 - -
Seca3g10223 435 MobiDBLite consensus disorder prediction 228 251 - -
Seca3g10223 435 MobiDBLite consensus disorder prediction 185 204 - -
Seca3g10223 435 ProSiteProfiles AGC-kinase C-terminal domain profile. 346 435 IPR000961 GO:0004674|GO:0005524|GO:0006468
Seca3g10223 435 SMART serkin_6 20 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g10223 435 SUPERFAMILY Protein kinase-like (PK-like) 18 378 IPR011009 -
Seca3g10223 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 153 165 IPR008271 GO:0004672|GO:0006468
Seca3g10223 435 Gene3D Phosphorylase Kinase; domain 1 20 115 - -
Seca3g10223 435 FunFam Serine/threonine-protein kinase OXI1 116 184 - -
Seca3g10223 435 ProSiteProfiles Protein kinase domain profile. 20 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g10223 435 Gene3D Transferase(Phosphotransferase) domain 1 245 364 - -
Seca3g10223 435 Gene3D Transferase(Phosphotransferase) domain 1 116 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10223 Seca-Chr3 246890784 246893078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10223 13 435 AGC Kinase Gene Family AT3G25250 57.377 3.35e-158 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Seca3g10223 Pkinase 6.6e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10223 K20714 - gmx:100785773 593.193