Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10222 ATGGAGCACAATGTATGTCAATCACTTGAAGTTAATGAGCATAAAGATATTTTTCTTGGCCAAGTTGTTTATAACAAAGATGAAGCTTATGCCTTGTACCAAGAACATGCATTCAAAATGGGTTTTAGTGTGAGAAAAGGGAGGGAGTTGTATTATGATATTGAAAAAAAGAACACTCGTTTGAAGGATTATTATTGCTCTAAACAAGGGTTTAAGAACAATGAACTTGTAGGTGAAGTGGCTTATGAAAGAGCAGATTCAAGAACAGATTGCAAAGCTATGGTGAGATTTAATGTGAGTAAGGATGGAGTATGGAAAATTACAAAGTTAGAACTGAATCATAACCATGACTTTGTGCCACAAGAGCAAAGACATTTGCTACGTTCTATGAGAGGCGTATCAAATGCCAAAGGAGGCCTCATTAATTCCATGGTGAATGCAGGTATGAAAGTTACAAATATTTGGAGTTATTTGGGGGAAGAGGTTGGTGGATTTGATAATCTTGGTATTACAATGAAAGATATGCATAATTATGTCTACTCTGAAAAGTTGAAATTAATTGATGCTGGTGATGCTCAGGCTTTAGTGAATCACTTGCAAAGTAGACAGGCACAAGATGCAATGTTCTACTATAGTGTGCAATTAGACCAGGAATCACGTTTGACTAATGTATTTTGGAGAGATGGTAAATCTAAAGTTGATTATGATTGCTTTGGGGATGTTGTGATTTTTGACACCACTTACCGTACCAATAAATATAACTTGATTTGTGCCCCCTTTGTTGGTGTAAATCATCATTGGCAAAATGTCATGTATGGTTGTGCTTTGTTATCTGATGAAACTGCAATTTCTTTCACTTGGTTGTTCAAAGTGTTTTTGGAAAGTATGGGAAACCAACAACCAAAAACCATCTTTACAGATCAAGATGCAGCTATGGCAAAAGCAATTGGAGAGGTAATGCCAAACACATGTCATCGATTATGCTTGTGGCATATAGCAAAAAATGCTCCTTCTCATTTGGGTTCTCTAAATTCTGACAATAAGTTTCAAAGCTTATTCAATAAATGCATGAAAGGTTGTGATTCAGAAGAAGAATTTCAAAGCACTTGGGATGAAATGATAAATGAGTATAAACTTCATGATCATCAATGGTTGAGCAATATGTATAAAATTCGTCACAAGTGGAGCACTGCTTTTATTTCTGCAGGTATCAAGTCTTCTCAAAGGAGCGAAAGTACAAACAGTGTGTTGGGTGAGATTGCAGGAAAAACAACAAGTCTCACACAATTCTTAGTGGCATTTGAGAAGATGGTAAAAAAGTGGCGCTACTTAGAAGTTGAGAAAGAATTCAAAAATAGTCAAAGTGCACCTCCTCGTATTATAAATATTAGTGAGACTCTACGACATGCATCTTTGATATATACTCATAAGATATTTAAACTATTTTTGAATGAATATCTTGAAGGGACAGGTGGAAACACTTCTATGGAGATTGGTGGGTGTAATAATGTGTCATATCATGAAGTTATTTTTAACCATATGCCTAATAAGAAGTATCAGGTAACATTTGACTCTTCCACTATGATGATTAATTGCAGCTGTCACAAGTTTGATTCTATGGGTATTCTGTGTAGTCATGCCTTGCGAATTTACAACATTAAAGGTATTTTAAAAATACCCGACCAATACTTCTTAAAAAGATGGTCAAAAAGTGCAAGGTCCATGATTTATGAGCACATAAATAGGGGTTCGAAAGAAGATTCTAGCTCTAATGTCATTAACTCAATGACCAATGGTGATGATGCTGGTATTCTTTATCGCAATGCTATTATGAAGTCATTTTATAATCTGGTTTTGGAAACTCAAGAACACAAAGAAACTCAGCAAATTATGTGGAAATTGCTTAATATTGGAGTTGAGCAAGTGCAACAATGTATTGGTAAGCTCAATTTAAATTCAAATGCAGAAACCATTGAGAACAAATTCACTCAAATTGAGGATAATGAATGGGCTGCAATTTTTAATCCTCCTCTTGCAAAGACCAAAGGAATGTCTACTGCTCGCAAGAAGGGGCATTTTGAGAAAAGGAAGCGATCAACCACAAAAACAAAGCAAAATAAAGAGAAACAAAAAGAAGATGGGTTTTGTGCTGTTAATTCTTCTACAATTGAGCTAACTAATGTTTTGAATTGCATGGATAAGTCAGCAATCTTGTGA 2217 0.3514 MEHNVCQSLEVNEHKDIFLGQVVYNKDEAYALYQEHAFKMGFSVRKGRELYYDIEKKNTRLKDYYCSKQGFKNNELVGEVAYERADSRTDCKAMVRFNVSKDGVWKITKLELNHNHDFVPQEQRHLLRSMRGVSNAKGGLINSMVNAGMKVTNIWSYLGEEVGGFDNLGITMKDMHNYVYSEKLKLIDAGDAQALVNHLQSRQAQDAMFYYSVQLDQESRLTNVFWRDGKSKVDYDCFGDVVIFDTTYRTNKYNLICAPFVGVNHHWQNVMYGCALLSDETAISFTWLFKVFLESMGNQQPKTIFTDQDAAMAKAIGEVMPNTCHRLCLWHIAKNAPSHLGSLNSDNKFQSLFNKCMKGCDSEEEFQSTWDEMINEYKLHDHQWLSNMYKIRHKWSTAFISAGIKSSQRSESTNSVLGEIAGKTTSLTQFLVAFEKMVKKWRYLEVEKEFKNSQSAPPRIINISETLRHASLIYTHKIFKLFLNEYLEGTGGNTSMEIGGCNNVSYHEVIFNHMPNKKYQVTFDSSTMMINCSCHKFDSMGILCSHALRIYNIKGILKIPDQYFLKRWSKSARSMIYEHINRGSKEDSSSNVINSMTNGDDAGILYRNAIMKSFYNLVLETQEHKETQQIMWKLLNIGVEQVQQCIGKLNLNSNAETIENKFTQIEDNEWAAIFNPPLAKTKGMSTARKKGHFEKRKRSTTKTKQNKEKQKEDGFCAVNSSTIELTNVLNCMDKSAIL. 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10222 738 MobiDBLite consensus disorder prediction 685 704 - -
Seca3g10222 738 Coils Coil 648 668 - -
Seca3g10222 738 Pfam MULE transposase domain 241 335 IPR018289 -
Seca3g10222 738 Pfam SWIM zinc finger 519 550 IPR007527 GO:0008270
Seca3g10222 738 MobiDBLite consensus disorder prediction 682 712 - -
Seca3g10222 738 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 13 643 IPR031052 GO:0006355
Seca3g10222 738 Pfam FAR1 DNA-binding domain 32 119 IPR004330 -
Seca3g10222 738 ProSiteProfiles Zinc finger SWIM-type profile. 519 555 IPR007527 GO:0008270
Seca3g10222 738 SMART 26again6 530 557 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10222 Seca-Chr3 246883047 246885859 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g10222 MULE 1e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10222 - - tpra:123905334 1147.5