Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10200 ATGGCTGAGCAAATTCCATACGGTGTTGCTTCAAGCATCATTGACAGATTGGCTTCTGCAGCCTTTCGTGAACTTGGGCTGATTTATGGTGTCAGGGATGAGTTGGAAAGCCTTAAGAACACAGTTGAATCCATTAAAGCTGTGCTCCTTGATGCTGAAGAGAGACAAGAACGAGATCATGCTGTACAGATCTGGATAAGAAGGCTCAAAGATGTGCTTTATCCTGCAGATGACTTGCTTGATGAATTTGCCATTGAGGATATGAGACACAAACTGGATGCAGGTCACAAGAACAAAGTGAAAGAGGTATTTCATTCCTTGGCTCCAAACTATGTAGCATTTCGCCTTAAAATAGCTCATAAAATTGAAAAAATACAAAAAAGGTTTAAAGATGTAGTGCAAGAAATGTCTATCTTGAATTTAAGCCCAAGAGTTGTGGTAGTTAAACAAAGTGATAGTGTAAGGAGGGAAACTAGTTCTTTTGTGTTAGAATCAGATATCATTGGGAGAGAAGATAGTAAAAAGGAGATTATAAGTTTGTTAAGGCGACCACATGAAAAGCAAGATGTCTCTGTGATTGCTATTGTTGGCATTGGTGGTTTAGGCAAGACAGCTCTTGCTCAATTGGTGTATAATGATGTGGAAGTGCAAAACTTTTTTGAAAAGCGAATGTGGGTATGTGTCTCTGATAACTTTGATGTCAAAACTATTGTGAAGAAAATGTTGGAGTTATTAACCAATAGTCAAATTGGTGATGAGTCATTGGAGAAATTGCAATCTATGTTGCGTGAAAATTTAACCGGTAAAAGATACTTGTTAGTCCTTGATGACATTTGGAGTGAGAGTCATGAGAAATGGGCTCAATTGAGAACTTACTTGATGTGCGGCGCACAAGATAGTAAGATTTTAGTGACAACTCGTAGTAAAATTGTGGCACGAACAATGGGTGTAAATGTCCCCTATGTTTTGAATGGTTTGACTACAGAGGAATCTTGGGATTTGTTGAAGAAAATTACATTTGGGGATGATACCATGGGAGTGAACCAAACTCTAGAATCAATTGGTAAAAAGATAGCAGAGAAGTGCAAAGGTGTTCCTTTAGCAATTAGAACACTGGGAGGCATATTACAAAGTAAAAATGAAGAAAATGAATGGATTGGTGTTTTACAAGGTGACTTTTGGAAATTATGTGAAGATGAGGATAGTATCATGCCGGTTTTAAAATTAAGTTACCAAAACTTGTCGCCTCAACAAAGACAATGTTTTGCGTATTGCTCTTTATATCCCAAGGATTGGGAAATTAAGAAGGATGATTTGATTCAACTATGGATGGCACAAGGTTATCTTGAATGTTCAACTGAAAAGCAACTCATGGAAGATGTTGGTAAGCAAATCGTGAATGTCTTCTTGATGAAGTCATTTTTTCAAGATGCAAAATTGAATGAGCATGGTGACATAATGTGTTTTAAGATGCATGATTTAATGCATGATCTTGCGATGCATGTAGCTGGCAATGATTGTTGTTACTTAGATGGTGAGGCAAAAAGACTTGTGGAAAGACCCATGCATATATCATTAGAAATTAATGCCATTCATTTATTGGGTTCATTGGATGCAAGTAAGCTTCGAACTTTGATTTTGTTTTCTTGGAGGAAATTGAGTGCGAAGGAATTATCTATAATTTCAAATTTCAAATACTTACGTGTCTTGAAGGTGTTTGATAATTTTTTTGGAAACTTGTCTGCTTTAATTAGAAAGATGAAGCATTTAAGATACCTTCACTTATTTTGTTCTGACCCACCAACAAGTCTTCCAAGATCCATAAGCAATCTTGTTTGCTTACAAACATGGAATTTGGGAATCGATGAAAAAAGAAGTGAGTTCTCTACTAAAGTTATCTCAAGATTAATCAAATTGAGACACCTAGATATCTACAAATGGAATGTCTCAAAAGACAAGATGCCGGTTGGATTTGGAAAATTGACAGCGCAACAAAAGTACGAGGGTGTGATATATTCAAATTGGCTTTCTTCAGTCACAAATATCGTTGAAATATCTCTCTCTGTTTGCCGCAATTTCCAATATCTCCCTCCATTGGAACGTCTCCCATTCCTTAAGTCACTTAGTCTACATTTCCTTGATGATCTAGAGTACATATATTATGAAGAGAGTTTTCCTGGAACATTCTTCCCATCTTTGGAAAGACTCATATTTTTCTTCTGCAAAAAGCTCAAGGGGTGGTGCAGGATAGGAGATGAATCAAATGATACTAACAATTCTTCAAATCATCTCTTATTGCCTCCATTTCCACGTCTTTCACATTTATGCATCAACAATTGTTCGATGTTGATTCACATGCCTACTTTTCCAAACCTTGATAAGAGTTTGGAATTGAGTGATTGTAGTATGGTGCCATTGGAAGCAACACTAAACATAGCAATTGACTTCATTCCTCTTTCCATGCTCAAATCCTTACACATTGGTGGACGTCAAACATTTCATGAAATTGAAATTTGGTTTAAGGATAATCACAACCGCCTTTCTTCTTTGCAAAAAATCACCTTCAGTAAATGCAAAGACCTAAACGCATTGCCAGATTGGATTTGCAACCTCTCAACACTTCAGTGTCTCAAAATTGTCGATTGCAAGGATTTGGCGTCACTACCTGAAGGAATATCTCGTCTTACCAACTTACAATCCTTGGAAATCATGGAATGTCCCTTCTTAATTGAAGAATGCCAAACAAAAACAAGTGCAACTAGGCCAAAAATTGCTCACATCCCAAACATAATCATAAAGTATCCTCCTTTTGGCTGA 2817 0.3681 MAEQIPYGVASSIIDRLASAAFRELGLIYGVRDELESLKNTVESIKAVLLDAEERQERDHAVQIWIRRLKDVLYPADDLLDEFAIEDMRHKLDAGHKNKVKEVFHSLAPNYVAFRLKIAHKIEKIQKRFKDVVQEMSILNLSPRVVVVKQSDSVRRETSSFVLESDIIGREDSKKEIISLLRRPHEKQDVSVIAIVGIGGLGKTALAQLVYNDVEVQNFFEKRMWVCVSDNFDVKTIVKKMLELLTNSQIGDESLEKLQSMLRENLTGKRYLLVLDDIWSESHEKWAQLRTYLMCGAQDSKILVTTRSKIVARTMGVNVPYVLNGLTTEESWDLLKKITFGDDTMGVNQTLESIGKKIAEKCKGVPLAIRTLGGILQSKNEENEWIGVLQGDFWKLCEDEDSIMPVLKLSYQNLSPQQRQCFAYCSLYPKDWEIKKDDLIQLWMAQGYLECSTEKQLMEDVGKQIVNVFLMKSFFQDAKLNEHGDIMCFKMHDLMHDLAMHVAGNDCCYLDGEAKRLVERPMHISLEINAIHLLGSLDASKLRTLILFSWRKLSAKELSIISNFKYLRVLKVFDNFFGNLSALIRKMKHLRYLHLFCSDPPTSLPRSISNLVCLQTWNLGIDEKRSEFSTKVISRLIKLRHLDIYKWNVSKDKMPVGFGKLTAQQKYEGVIYSNWLSSVTNIVEISLSVCRNFQYLPPLERLPFLKSLSLHFLDDLEYIYYEESFPGTFFPSLERLIFFFCKKLKGWCRIGDESNDTNNSSNHLLLPPFPRLSHLCINNCSMLIHMPTFPNLDKSLELSDCSMVPLEATLNIAIDFIPLSMLKSLHIGGRQTFHEIEIWFKDNHNRLSSLQKITFSKCKDLNALPDWICNLSTLQCLKIVDCKDLASLPEGISRLTNLQSLEIMECPFLIEECQTKTSATRPKIAHIPNIIIKYPPFG. 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10200 938 PRINTS Disease resistance protein signature 192 207 - -
Seca3g10200 938 PRINTS Disease resistance protein signature 362 376 - -
Seca3g10200 938 PRINTS Disease resistance protein signature 265 279 - -
Seca3g10200 938 PRINTS Disease resistance protein signature 845 861 - -
Seca3g10200 938 FunFam Probable disease resistance protein At1g63360 411 501 - -
Seca3g10200 938 Pfam NB-ARC domain 171 413 IPR002182 GO:0043531
Seca3g10200 938 CDD RX-CC_like 7 132 IPR038005 -
Seca3g10200 938 FunFam Probable disease resistance protein At1g61300 148 320 - -
Seca3g10200 938 Gene3D - 10 128 - -
Seca3g10200 938 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 425 IPR027417 -
Seca3g10200 938 PANTHER DISEASE RESISTANCE PROTEIN RP 35 794 IPR044974 GO:0006952
Seca3g10200 938 SUPERFAMILY L domain-like 490 916 - -
Seca3g10200 938 Coils Coil 35 55 - -
Seca3g10200 938 Gene3D Ribonuclease Inhibitor 522 746 IPR032675 -
Seca3g10200 938 Gene3D - 411 502 IPR036388 -
Seca3g10200 938 Gene3D - 325 410 IPR042197 -
Seca3g10200 938 Pfam Rx N-terminal domain 10 97 IPR041118 -
Seca3g10200 938 Gene3D - 150 321 IPR027417 -
Seca3g10200 938 Gene3D Ribonuclease Inhibitor 757 924 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10200 Seca-Chr3 246590292 246593108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10200 189 467 WRKY Transcription Factor Family AT5G45050 27.184 4.74e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10200 - - tpra:123883200 1137.09