Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca3g10195 | ATGAAGTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTCGAGATCGATGACGATCAGAAGCTACGAGCATTTTGGGACAAGAGGATCTCACAGGAAGTCAATGGAGATGCTCTGGGTGAGGAGTTCAAAGGCTATGTCTTCAAAATCACTGGTGGTTGTGACAAACAAGGATTCCCAATGAAGCAGGGAGTGCTAACCCCTGGTCGTGTTCGTCTTTTGCTCCACAGAGGAACTCCTTGTTTCCGTGGGTATGGAAGACGCAATGGAGAGCGTAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGATCTCTCTGTTTTGAACTTGGTTATTGTGAAGAAGGGTGAAAATGATTTGCCAGGGTTGACTGATGTCGAGAAGCCAAGAATGAGAGGTCCAAAGAGAGCATCTAAAATTCGTAAGCTGTTCAACCTGTCTAAGGAAGATGATGTGAGGAAGTATGTCAACACATACCGCCGAACCTTCACAACAAAATCTGGGAAAAAGGTGAGCAAAGCTCCAAAGATTCAACGACTGGTCACTCCTTTGACACTGCAAAGAAAGCGGGCAAGGATTGCAGAGAAGAAGAAGAGAATTGCAAAGGCAAAATCAGATGCAGCTGAGTATCAGAAACTTCTTGCCTCCAGATTGAAAGAGCAAAGGGAACGCCGCAGTGAGAGTTTGGCAAAGAGGAGATCCAAGCTTTCCAGTGTTTCTAAGCAAGCTACCACTGCATAG | 750 | 0.4653 | MKFNIANPTTGCQKKLEIDDDQKLRAFWDKRISQEVNGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARIAEKKKRIAKAKSDAAEYQKLLASRLKEQRERRSESLAKRRSKLSSVSKQATTA. | 250 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca3g10195 | 249 | Coils | Coil | 189 | 216 | - | - | |
| Seca3g10195 | 249 | ProSitePatterns | Ribosomal protein S6e signature. | 52 | 63 | IPR018282 | GO:0003735|GO:0005840|GO:0006412 | |
| Seca3g10195 | 249 | Gene3D | - | 133 | 234 | - | - | |
| Seca3g10195 | 249 | SMART | Ribosomal_S6e_2 | 1 | 128 | IPR001377 | GO:0003735|GO:0005840|GO:0006412 | |
| Seca3g10195 | 249 | Pfam | Ribosomal protein S6e | 1 | 128 | IPR001377 | GO:0003735|GO:0005840|GO:0006412 | |
| Seca3g10195 | 249 | PANTHER | 40S RIBOSOMAL PROTEIN S6 | 1 | 240 | IPR001377 | GO:0003735|GO:0005840|GO:0006412 | |
| Seca3g10195 | 249 | MobiDBLite | consensus disorder prediction | 220 | 249 | - | - | |
| Seca3g10195 | 249 | PIRSF | RPS6e | 1 | 249 | IPR014401 | GO:0003735|GO:0005840|GO:0006412 | |
| Seca3g10195 | 249 | MobiDBLite | consensus disorder prediction | 220 | 237 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca3g10195 | Seca-Chr3 | 246550502 | 246555402 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca3g10195 | 1 | 249 | Cytoplasmic Ribosomal Protein Gene Family | AT5G10360 | 71.084 | 8.62e-120 | 338 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca3g10195 | K02991 | - | gmx:100801194 | 440.269 |