Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10194 ATGATGGCCAAAGCACGTAGCACTTTCTGTTTAGCCTTACTTCACATTTACCTGAGCTTTTTGCTGACCCAATCAGCGCCTGAAAGTGCCTCAGTAACACAGCTTCCAGGCTTCAATGGCACAATACCTTCCAAGCACTATGCTGGGTATGTAACAGTGGATGAAAGTCATGGAAGGAACTTGTATTACTATTTTGTTGTGTCAGAAGGTAAACCTTCTGAGGATCCAGTGGTTCTGTGGCTTAATGGGGGACCTGGGTGCTCTAGCTTTGATGGCTTCATTTATGAGCATGGTCCTTTTAATTTTGAAGCTGCAAAGACAAAGGGAAGCCTGCCAACACTGCATCTCAATCCATACAGCTGGACAAAGGTTTCCAGTGTCATATATTTGGATTCTCCTGCTGGTGTGGGGTTTTCATACTCTGAGAATGAAACTGATTACACAACTGGAGACATAAAGACTGCTTTTGATACACATGCCTTTCTCCTCAAGTGGTTTGAACTATATCCTGAGTTCCTTCCCAACCCATTCTTCATTGCTGGAGAGTCATATGCTGGAGTTTATGTGCCTACTCTTGCTTATGAAGTAATGAAAGGAATTGATGCTGGTGTGGAGCCCAAGCTGAATTTAAAGGGTTACATGGTTGGAAATGGTGTTACGGATGAACAAATTGATGGAAATGCCCTTGTACCATTTGTGCATGGGATGGGTCTTATCTCAGATGATCTGTATCAGGAGGTTAACACTGTGTGCAATGGAAATTTCTATAATCCACTCAGTGAGAATTGTGCTAGCAAGCTTGCAAAAATTGATAAGATCATTGAGGAGGTAAACATATATAATATTCTGGAACCATGTTATCACGGCACAGAGGCAGAGAAGAATGCTGAATCCTATATTAGGTTGCCATCTAGCTTCCGGAAGTTGGGTGAGACTGAGAGACCTCTTCCAGTGAGGAAAAGAATGTTTGGTCGTGCTTGGCCCCTAAGAGCACCTGTGAGAGATGGAATTGTACCAACTTGGCCAGAACTAATGAATAGCGCTGATGTTCCATGCACTGATGATGAGGTTGCAAACTCATGGTTGAACAATCAAGCAGTCAGGAATGCAATTCACACTGCAAATAAAAGTGTGGTCAATAGTTGGGAATTATGCACGGACAGAATTATCTTCAACCATGATGCTGGAAGCATGATCCCTTACCACAAGAACCTAACTTCCAAAGGATATCGAGCACTTATATTCAGTGGTGATCATGACATGTGTGTTCCATTTACGGGGAGTCAAACATGGACGAGATCAGTTGGATATAAGATTGTTGATGAATGGAGGCCATGGTTCTCCAATGGTCAAGTTGCTGGGTTTACTCAAGGATACGACAAAAATCTTACTTTTCTGACCATAAAGGGATCTGGGCATACTGTTCCGGAATATAAACCACAAGAGGCACTGGATTTTTATAAACGCTTTCTTGCTGGATTGCCATTATGA 1491 0.4252 MMAKARSTFCLALLHIYLSFLLTQSAPESASVTQLPGFNGTIPSKHYAGYVTVDESHGRNLYYYFVVSEGKPSEDPVVLWLNGGPGCSSFDGFIYEHGPFNFEAAKTKGSLPTLHLNPYSWTKVSSVIYLDSPAGVGFSYSENETDYTTGDIKTAFDTHAFLLKWFELYPEFLPNPFFIAGESYAGVYVPTLAYEVMKGIDAGVEPKLNLKGYMVGNGVTDEQIDGNALVPFVHGMGLISDDLYQEVNTVCNGNFYNPLSENCASKLAKIDKIIEEVNIYNILEPCYHGTEAEKNAESYIRLPSSFRKLGETERPLPVRKRMFGRAWPLRAPVRDGIVPTWPELMNSADVPCTDDEVANSWLNNQAVRNAIHTANKSVVNSWELCTDRIIFNHDAGSMIPYHKNLTSKGYRALIFSGDHDMCVPFTGSQTWTRSVGYKIVDEWRPWFSNGQVAGFTQGYDKNLTFLTIKGSGHTVPEYKPQEALDFYKRFLAGLPL. 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10194 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 463 476 IPR001563 GO:0004185|GO:0006508
Seca3g10194 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 165 190 IPR001563 GO:0004185|GO:0006508
Seca3g10194 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 117 129 IPR001563 GO:0004185|GO:0006508
Seca3g10194 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 130 140 IPR001563 GO:0004185|GO:0006508
Seca3g10194 496 Gene3D - 348 495 - -
Seca3g10194 496 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 32 480 IPR001563 GO:0004185|GO:0006508
Seca3g10194 496 Gene3D alpha/beta hydrolase 24 318 IPR029058 -
Seca3g10194 496 FunFam Carboxypeptidase 25 309 - -
Seca3g10194 496 SUPERFAMILY alpha/beta-Hydrolases 32 495 IPR029058 -
Seca3g10194 496 Pfam Serine carboxypeptidase 36 492 IPR001563 GO:0004185|GO:0006508
Seca3g10194 496 FunFam Carboxypeptidase 351 495 - -
Seca3g10194 496 ProSitePatterns Serine carboxypeptidases, serine active site. 179 186 IPR018202 GO:0004185
Seca3g10194 496 ProSitePatterns Serine carboxypeptidases, histidine active site. 463 480 IPR033124 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10194 Seca-Chr3 246528234 246533606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10194 357 496 Calmodulin-binding Proteins AT2G22960 45.714 5.78e-40 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10194 K16296 - gmx:100792057 907.901