Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10175 ATGGCTGAGCAAATTCCATACGGTGTTGCTTCAAGCATCATTGTCAGGTTGGCTTCTGCGGCCTTTCGTGAACTTGGACGGATTTATGGTGTGAGGGATGAGTTGGAAAGCCTTAAGAAGACGGTTGAATCCATCGAAGCTGTGCTCCTTGATGCTGAGGAGAGACAAGAACGAGATCATGCTGTGCAGAACTGGATAAGAAGGCTCAAAGATGTACTTTACCCTGCAGAAGACTTGCTAGATGAATTTGCCATTCATGATATGACACACAAACACAAGAACAAAGTCAAAGAGGTATTTCATTCCTTGTCTCCAAACCATGTAGCATTTCGCCGTAAAATGGCTCATAAAATTGAAAAAATACAAAAAAAATTTAAAGAAGTAGTGCAAGAAATGCCTCTGTTGAATTTAAACCAAAGAGTTGTGGTGGTTAAACAAAGTGACAGTGTAAGGAGGGAAACTAGTTCTTTTGAGTGGGAATCAAAAATCATTGGAAGAGAAAATAGTAAAAAGGAGATCATAAGTTTGTTGAGGCGACCACATGAAAAGCAAAATGTTTCTGTCCATGCTATTGTTGGTATTGGTGGTTTAGGCAAGACAGCTCTTGCTCAATTGGTGTATAATAATGTGAAAGAGCAAAAATTTTTTGATGAGTGTATGTGGGTATGTGTATCTGATAACTTTGATGTAAAAATTATTGTGAAGCAAGTGCTGAAGTTATTAACTGATAGCCAAATTGGTGATGAGTCATTGGAAAAATTGCAAACTATGTTGCGTGAAAATTTAACCGATAAAAAGTACTTGTTAGTCCTGGATGACATTTGGAGTGAGAGTTATGAGAAATGGGATCAATTGAGAACTTACTTAATGTGTGGTGCTCATGGTAGTAAGGTTTTAGTGACAACCCGTAGTAAAATTGTGGCACAAACAATGGGTGTAAGCGACCCCTTTGTTTTGAATGGTTTGACTCCAGAAGAGTCTTGGAATTTGCTAAAGAAAATTACATTTGGGGATGATACCACTAGAGTGAACCAAACTCTAGAATCAATCGGTAAGAAGATAGCAGAGAAGTGTAAAGGTGTTCCGTTAGTAATTAAAACACTGGGAGGCGTATTGCTGAAAAGAAGTGAAGAAAGTGAATGGATTGATGTTTTACAAGGTGACTTTTGGAAATTATGTGAAGAGGAGGGTAGTATCATGCCGGTTTTAAAACGAAGTTACCAAAACTTGTCACCTCAAGAGAGACAATGTTTTGCGTATTGCTCTTTATATCCTAAGGATTTTGTGATTGAGAAGAATGAGTTGATTCAAATGTGGATGGCACATGGTTATCTTGAAGGGGAGCTTATGGAAGATGTTGGTAACCAATTCGTAAAGACCTTTCTGATGAAGTCACTTTTTCAAGATGCAGAAATTAGTCGTGTAAAAGGTGACATACTTCGTTTCAAGATGCATGATTTAATTCATGATCTGGCTATGCATGTAGCTGGCAATGATTGTTGTTACTTGGATGGTGAGGCAAAAGGAGTTGTGGGAACACCCATGCATGTATTTTTGGAACATAATGCCATTCATTTGTTGGGCTCATTAGATGCAAGCAGACTTAGAACTTTGATTTTTCCCTTTCACCCTTACGATGAGAGATTGACTGAGGATGAATTGTCCATTATTTCAAAGTTTAAGCACTTACGTGTCTTGAATGTGTCAGGTTCTTCAGTAGGCAAGTTGTTTGCTTCAATTGGAAAATTGAAGCATTTAAGATATCTCAACTTAAGACCGTGTTACCAACTAGCAGGTCCTCCCAAATCCATGAGCAATCTTATTTTCTTACAAACATTGGAATTGGGGTTTTGTACAGACGTTGAATTTTCTACAGAAGTTGTCTCGAAACTAATCAATTTGAGACACCTCCACATTGAGAGCATGGGTATTGATATCTTCAATGTTGATGTACCGAGAATACTGAAAGCATTCGAAGACAAGAAGGAGGTTGAATTGAGAATATTGAGAGCGCAACAGGTGCAATACAAGAGTGTGACAAAGTGGCTTTCTTCCCTAACACATATTGTTGAGATCTCTCTCCAGCGGTGTTATGGACTCCGGTATCTCCCACCAATGGAATGTCTCCCGTCCCTAAAGTCAATTTCAATCTTTCAACTTGATGAATTGGAGTACATATATTATGAAGAGGGTAAAACATTCTTCCCATCTTTAAAGATACTCACTATTATGGCCTGTCTAAAGCTCAGGGGATGGTGCAGAATGGGAGATGATACTAACAATTCTTCACATCATCTCTCGTTGCCTCAGTTTCCTCGTCTTTCTTATTTAACCATCAGTTGGTGTCCAATGTTGACTAGTGTGCCTCCTTTTCCAAAGCTTGACAAGTCATTGGAATTGTCGGATTGTAGTGTGGAGCCATTGGAAGCAACTCTGAACAAAGCGGCAGTGAATGACTTCACTCCTCTTTCCATGCTCAAATCCTTGAGAATTGAAGGCAAAATTCTAGGCATGGAAAAACTCCCAAAGGATTGGATGCAAAATCTTACTTCTCTCAATTATCTTGATTTTTCATCCTTTCCAAGTGAAGGATTTCAGGAAATTGAAGTTTGGTTTAAGGACGACGTCAACTTTCTTCCTTCTCTGAATGCAATCGGGTTTTATTTTTGTAAACACCTAAAGGCATTGCCAAATTGGATCTGCTATTTCTCATCGCTTCAGCACCTCGTGTTGTACAATTGCCCTCATTTGGCATCAGTTCCTGAAGGAATATCTCGTCTTACCAACTTACGGACCCGAGAAATCTATGGCTGCCCCCTTTTAATTAAAAAACGTGAGGCATAA 2844 0.3892 MAEQIPYGVASSIIVRLASAAFRELGRIYGVRDELESLKKTVESIEAVLLDAEERQERDHAVQNWIRRLKDVLYPAEDLLDEFAIHDMTHKHKNKVKEVFHSLSPNHVAFRRKMAHKIEKIQKKFKEVVQEMPLLNLNQRVVVVKQSDSVRRETSSFEWESKIIGRENSKKEIISLLRRPHEKQNVSVHAIVGIGGLGKTALAQLVYNNVKEQKFFDECMWVCVSDNFDVKIIVKQVLKLLTDSQIGDESLEKLQTMLRENLTDKKYLLVLDDIWSESYEKWDQLRTYLMCGAHGSKVLVTTRSKIVAQTMGVSDPFVLNGLTPEESWNLLKKITFGDDTTRVNQTLESIGKKIAEKCKGVPLVIKTLGGVLLKRSEESEWIDVLQGDFWKLCEEEGSIMPVLKRSYQNLSPQERQCFAYCSLYPKDFVIEKNELIQMWMAHGYLEGELMEDVGNQFVKTFLMKSLFQDAEISRVKGDILRFKMHDLIHDLAMHVAGNDCCYLDGEAKGVVGTPMHVFLEHNAIHLLGSLDASRLRTLIFPFHPYDERLTEDELSIISKFKHLRVLNVSGSSVGKLFASIGKLKHLRYLNLRPCYQLAGPPKSMSNLIFLQTLELGFCTDVEFSTEVVSKLINLRHLHIESMGIDIFNVDVPRILKAFEDKKEVELRILRAQQVQYKSVTKWLSSLTHIVEISLQRCYGLRYLPPMECLPSLKSISIFQLDELEYIYYEEGKTFFPSLKILTIMACLKLRGWCRMGDDTNNSSHHLSLPQFPRLSYLTISWCPMLTSVPPFPKLDKSLELSDCSVEPLEATLNKAAVNDFTPLSMLKSLRIEGKILGMEKLPKDWMQNLTSLNYLDFSSFPSEGFQEIEVWFKDDVNFLPSLNAIGFYFCKHLKALPNWICYFSSLQHLVLYNCPHLASVPEGISRLTNLRTREIYGCPLLIKKREA. 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10175 947 Gene3D Ribonuclease Inhibitor 515 761 IPR032675 -
Seca3g10175 947 PRINTS Disease resistance protein signature 358 372 - -
Seca3g10175 947 PRINTS Disease resistance protein signature 261 275 - -
Seca3g10175 947 PRINTS Disease resistance protein signature 581 597 - -
Seca3g10175 947 PRINTS Disease resistance protein signature 188 203 - -
Seca3g10175 947 SUPERFAMILY L domain-like 474 806 - -
Seca3g10175 947 Gene3D - 10 129 - -
Seca3g10175 947 Gene3D - 321 406 IPR042197 -
Seca3g10175 947 FunFam Probable disease resistance protein At1g61300 144 316 - -
Seca3g10175 947 PANTHER DISEASE RESISTANCE PROTEIN RP 35 790 IPR044974 GO:0006952
Seca3g10175 947 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 421 IPR027417 -
Seca3g10175 947 Gene3D Ribonuclease Inhibitor 762 946 IPR032675 -
Seca3g10175 947 Pfam Rx N-terminal domain 10 95 IPR041118 -
Seca3g10175 947 Coils Coil 35 55 - -
Seca3g10175 947 SUPERFAMILY RNI-like 737 938 - -
Seca3g10175 947 Gene3D - 407 495 IPR036388 -
Seca3g10175 947 Gene3D - 145 315 IPR027417 -
Seca3g10175 947 Pfam NB-ARC domain 167 408 IPR002182 GO:0043531
Seca3g10175 947 CDD RX-CC_like 7 128 IPR038005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10175 Seca-Chr3 246313428 246316271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10175 190 495 WRKY Transcription Factor Family AT5G45050 24.684 1.40e-08 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10175 - - tpra:123883200 1066.22