Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10164 ATGGACGAGGACCAAGAGATGGAGAGATTCGGAATGGAGAACGATTTCGAAGGTGGGCAATGGGTTGATGGCGAGTTCTACTATCGAAAGCGCAAAGAGAAACGCACTCAAACCAAAGATGATGTTCTTTATGGAGTTTTTGCTGACTCTGATGACGATGATGATGATTATTCTAGCCGAAAACGCCGGAACCGTGACTTATTGAAGAAGCCTGACCTCACCAAGCCTGTGAATTTTGTCTCTACTGGAACTTTTATGCCTAATCAGGAAATTGATAATAATTTGAAAGAGCAGGATGAGAAGGATAGTTATGCTAGTGAAGATAGGCCGGGTTTAGGTCTTGGTATGGGGTCTGCTAGCACCTCAGGGGCTGGTTTAGGTTTTAACTCAAGTCGTGTTGCGAATGGTACTGATAAAAATGATGAATCTGATGAGAATGAGGATAATAGTTTTCTTCCGACGGCATTTGGGAAGAAGATTAAGGAGGGGGCAATGAGGAGGGAAAAGGAAAAGGAGAGGGAGAGGTTGGAGAAGAAGAGAGGGCAGCGGCAGGGTCCTGGTCAAGATGGATTTACTGATGTTGGGAAGTTTGAGAAGCATACGAAGGGAATAGGGATGAAGCTGTTGGAGAAGATGGGTTATAGAGGAGGGGGTCTTGGGAAGAATGAGCAAGGTATTGTGGCTCCTATTGAGGCGAGATTGAGGGCTAAGAATTCTGGTATTGGATTTAATGACTCTAAGGAGACTACGCCGTTGCCTACTTTGCAGATGGAGAAGAAGAGTGTGCCAGGAGGAACCCAACCTACGATTGCCAGAACGAAAGAAAGGTCATGGTCAAAGCAATCAAAGTTGAAAAAGAAGAAGAAAGAGGAGGAAGAATATATAACTGCTGAGGAGTTGTTGGCAAGCAAGCAAGAAGAAGAATCAGAGGTCGTGAAGGTTTATGATATGAGGGGGCCGCAGGTTCGAGTATATACAAATTTGTCTGATTTGAACGCTGAGGAGAAAGCCAAGGAAAATGATGTCCCAATGCCAGAACTTCAGCATAATATGGGGTTAATAGTTCGGTTGGCTGAGGCTGAGATCCAAGAGATTGATAGAGATTTGAGGGGAGAGAGGGAGACAGCACTTAGCTTGAAGAAAGAAAAGGAGAAGTTAGAAAATGAGGCAGCATTTCAAAAGAAGCAGCTGGATAATTTGGAGCAAATAATGAAGGTGTTGGACCGAGTTGGAGAAGAGAAAACTCTAGGAACATTAACATTAGATTCCCTTGCTCAATGCTTTAGGGACTTGCACAAAAGATATGCTGATGACTACAAGTTGTGTAACTTGTCATGCATTGCTTGCTCATATGCTCTGCCTTTGTTTATCAGAGTGTTCCAAGGATGGGATCCTCTTCGAAATCCGTCTCATGGGTTGGAGTTGGTATCACAGTGGAAGGCATTGCTTCAAGGTGAAGATTCTCTGGATATATGGGATATATCATTACCTTATACTCAATTGGTTTCAGAGGTTGTATTGCCAGCTGTTAGAATATCTGGTATCAATACCTGGCAGGCACGGGATCCTGAGCCAATGCTACGGTTTCTGGAGTTATGGGAAAAGTTGCTTCCATCTTCAGTTCTTGCTACTGTATTGGACACTATAGTAATGCCAAAACTATCAAGTGCTGTAGATACTTGGGAACCCCACCGCGAGACTATTCCTATCCACACTTGGGTGCATCCATGGCTACCTCTGCTAGGGCACAAATTGGAGGGTATCTACCAGGTGATTCGTTTCAAATTTAGTATTGTTCTTGGTGCCTGGCACCCAAGTGATGGTTCTGCTTATGCTATATTGTCTCCTTGGAAGGCTGTATTTGATTCTGCAAGTTGGGAACAACTTATGCTTCGTTTTATTGTACCAAAGTTGCAGCTTGTCTTGCAAGAATTCCAAGTGAACCCAGCTAGTCAGAATCTTGAACAATTTTATTGGGTAATGAACTGGGCTTCAGCTATTCCAATTCATCTGATGGTTGATATGATGGAGAAATTCTTTTTTGCCAAATGGCTTCAGGTTTTGTATCATTGGTTATGCTCACATCCTAACTTTGATGAAGTTACAAAGTGGTATTTGGGATGGAAAGAACTTATTCCAAAAGAACTTTTGGCAAATGAAAGTATTCGATGCCAGCTTAATCGCGGTCTTGATATGATGAACCAGGCTGTTGAAGGTATGGAGGTGGTCCAACCTGGTTTGAAGGAGAATATAAGCTATCTTAGGGTACTTGAGCAAAGGCAATTTGAGGCTCAGCAGAAAGCAGCAGCTTATGCTCAACAGCAGGCTGCTGCAAGCTTGGGTGGTGCTGTCAACGCAGATGGTGTGACTGGTGTACATGAATTGAGCTTGAAAGAAGTCATTGAGGCGCATGCTCAACAACATGGTTTACTATTCAAGCTTAAACCTGGTAGAATGCACAACGGTCATCAAATATATGGGTTTGGTAATGTCAGCATAATAATAGACTCTCTAAATCAGAAGGTATATGCCCAAAATGAGGAAGCATGGTCTTTAGAATCTCTTCAAGGGTTGCTAGAGTTGCATAATAAATCCCTTAGTAAAAGACGCTGA 2613 0.4298 MDEDQEMERFGMENDFEGGQWVDGEFYYRKRKEKRTQTKDDVLYGVFADSDDDDDDYSSRKRRNRDLLKKPDLTKPVNFVSTGTFMPNQEIDNNLKEQDEKDSYASEDRPGLGLGMGSASTSGAGLGFNSSRVANGTDKNDESDENEDNSFLPTAFGKKIKEGAMRREKEKERERLEKKRGQRQGPGQDGFTDVGKFEKHTKGIGMKLLEKMGYRGGGLGKNEQGIVAPIEARLRAKNSGIGFNDSKETTPLPTLQMEKKSVPGGTQPTIARTKERSWSKQSKLKKKKKEEEEYITAEELLASKQEEESEVVKVYDMRGPQVRVYTNLSDLNAEEKAKENDVPMPELQHNMGLIVRLAEAEIQEIDRDLRGERETALSLKKEKEKLENEAAFQKKQLDNLEQIMKVLDRVGEEKTLGTLTLDSLAQCFRDLHKRYADDYKLCNLSCIACSYALPLFIRVFQGWDPLRNPSHGLELVSQWKALLQGEDSLDIWDISLPYTQLVSEVVLPAVRISGINTWQARDPEPMLRFLELWEKLLPSSVLATVLDTIVMPKLSSAVDTWEPHRETIPIHTWVHPWLPLLGHKLEGIYQVIRFKFSIVLGAWHPSDGSAYAILSPWKAVFDSASWEQLMLRFIVPKLQLVLQEFQVNPASQNLEQFYWVMNWASAIPIHLMVDMMEKFFFAKWLQVLYHWLCSHPNFDEVTKWYLGWKELIPKELLANESIRCQLNRGLDMMNQAVEGMEVVQPGLKENISYLRVLEQRQFEAQQKAAAYAQQQAAASLGGAVNADGVTGVHELSLKEVIEAHAQQHGLLFKLKPGRMHNGHQIYGFGNVSIIIDSLNQKVYAQNEEAWSLESLQGLLELHNKSLSKRR. 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10164 870 MobiDBLite consensus disorder prediction 122 136 - -
Seca3g10164 870 SMART G-patch_5 199 244 IPR000467 GO:0003676
Seca3g10164 870 MobiDBLite consensus disorder prediction 241 284 - -
Seca3g10164 870 MobiDBLite consensus disorder prediction 93 107 - -
Seca3g10164 870 Coils Coil 355 403 - -
Seca3g10164 870 Coils Coil 287 307 - -
Seca3g10164 870 PANTHER TUFTELIN-INTERACTING PROTEIN 11-RELATED 1 857 IPR045211 GO:0000390
Seca3g10164 870 MobiDBLite consensus disorder prediction 54 72 - -
Seca3g10164 870 MobiDBLite consensus disorder prediction 39 198 - -
Seca3g10164 870 MobiDBLite consensus disorder prediction 77 92 - -
Seca3g10164 870 Pfam Tuftelin interacting protein N terminal 4 103 IPR022159 -
Seca3g10164 870 ProSiteProfiles G-patch domain profile. 201 246 IPR000467 GO:0003676
Seca3g10164 870 Pfam G-patch domain 201 242 IPR000467 GO:0003676
Seca3g10164 870 PIRSF TFIP11 1 865 IPR024933 -
Seca3g10164 870 MobiDBLite consensus disorder prediction 160 184 - -
Seca3g10164 870 Pfam GC-rich sequence DNA-binding factor-like protein 421 688 IPR022783 -
Seca3g10164 870 MobiDBLite consensus disorder prediction 242 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10164 Seca-Chr3 246139594 246142206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10164 201 242 C2H2 Transcription Factor Family AT5G26610 47.619 1.10e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10164 K13103 - gmx:100781621 1434.85