Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10161 ATGATTCGAGAGCAAAAAACCGTTACAACTAAGTTTCTAAAATCCAATTCCATGAAAACCACCCTACCAAGAGTGGTTCGTATCACAGTAACAGATCACTTTGCCACAGACTCTTCCAGTGACGAAGAAGAAGCATTAGAACATCTCCCTAAGGCAAAGAGAATAGTGAATGAGATCAGAATCAGAGAAACAACTCTGTCTCACACAATTGGTGGTAACAACAATAAGAGACATGAAGATAATGTTAATCGAAGTTCTCTGAATAATCAGAGACCTAAACAAGATTCAAATGCTCACAACAACCACAAATATCGCGGCGTTCGTCAACGGCCATGGGGAAGATGGGCGGCGGAGATTAGAGATCCTCTGAGGCGATCGAGAGTGTGGCTTGGGACTTACGATACGGCGGAAGAAGCTGCTATGGTCTATGACAGAGCAGCTATTCATTTTAGAGGCGCTGATGCTGTTACGAATATTATAAAACCGCCTCCGAGAGAGAAATCTATACCGGAATGTGATGAAACTGAATCGGTTAATTGTGATAAAGAAGAATATGGCGGTGGTGTATCTTCGTCTTCTTCTCCTACCTCTGTGACTGTTCTTGTTTCTAGGCCTTTAAATGAGTGGATGCATATGGAAGAATGGTTTAGAGAGTTAAGAGGTGAAGAATTGTGCTTGGAGGATTCACTTGGTGGTTCTTGTCCTCTTTATGAACCTCTTCCTTTATTAGTTTCCAATCATAGTGATATTGATGTTCCTTTTAGTCTTGATAAGGATTTTGAATCGTGTAAATGGGATGTAGATGGTTACTTTAATGATCCTTTGTTACTCTCAACCATGTAA 843 0.4069 MIREQKTVTTKFLKSNSMKTTLPRVVRITVTDHFATDSSSDEEEALEHLPKAKRIVNEIRIRETTLSHTIGGNNNKRHEDNVNRSSLNNQRPKQDSNAHNNHKYRGVRQRPWGRWAAEIRDPLRRSRVWLGTYDTAEEAAMVYDRAAIHFRGADAVTNIIKPPPREKSIPECDETESVNCDKEEYGGGVSSSSSPTSVTVLVSRPLNEWMHMEEWFRELRGEELCLEDSLGGSCPLYEPLPLLVSNHSDIDVPFSLDKDFESCKWDVDGYFNDPLLLSTM. 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10161 280 SUPERFAMILY DNA-binding domain 103 159 IPR016177 GO:0003677
Seca3g10161 280 ProSiteProfiles AP2/ERF domain profile. 103 160 IPR001471 GO:0003700|GO:0006355
Seca3g10161 280 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 22 198 - -
Seca3g10161 280 CDD AP2 103 158 IPR001471 GO:0003700|GO:0006355
Seca3g10161 280 PRINTS Ethylene responsive element binding protein signature 104 115 IPR001471 GO:0003700|GO:0006355
Seca3g10161 280 PRINTS Ethylene responsive element binding protein signature 126 142 IPR001471 GO:0003700|GO:0006355
Seca3g10161 280 Pfam AP2 domain 103 152 IPR001471 GO:0003700|GO:0006355
Seca3g10161 280 SMART rav1_2 103 166 IPR001471 GO:0003700|GO:0006355
Seca3g10161 280 FunFam Ethylene-responsive transcription factor 2 102 161 - -
Seca3g10161 280 Gene3D AP2/ERF domain 102 160 IPR036955 GO:0003700|GO:0006355
Seca3g10161 280 MobiDBLite consensus disorder prediction 66 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10161 Seca-Chr3 246118747 246119589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10161 4 279 AP2-EREBP Transcription Factor Family AT4G27950 36.177 3.11e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca3g10161 AP2 2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10161 - - mtr:25500226 223.402