Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10100 ATGGCATCAACATTTGTCACCTTATCAAATCCTTTCCTACACAAAACCAGTGCCGTCTCATTCTCTAACCAGAGACTCCCAGTTTTGAAGAGGAACTCTTTGAAGATTAATGCAGTTGCCAAGAAATGGGAACCCACCAAGGTTGTGCCCCAGGCTGATAGAGTTCTCATTCGTCTGGAGGAGCTATCACAAAAAACAACTGGTGGAGTTCTGTTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAGTCCTAACTGTTGGCGCTGATGCTGGAGAACTAAAGGCTGGAACAAAGGTATGTTGTTTAGTTACTGTGAAAGAGCCCAGCCAACATTCTTGA 351 0.4444 MASTFVTLSNPFLHKTSAVSFSNQRLPVLKRNSLKINAVAKKWEPTKVVPQADRVLIRLEELSQKTTGGVLLPKSAVKFERYLVGEVLTVGADAGELKAGTKVCCLVTVKEPSQHS. 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10100 116 Gene3D GroES chaperonin 43 111 IPR037124 GO:0006457
Seca3g10100 116 Pfam Chaperonin 10 Kd subunit 47 101 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca3g10100 116 SMART Cpn10_2 47 109 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca3g10100 116 SUPERFAMILY GroES-like 47 103 IPR011032 -
Seca3g10100 116 CDD cpn10 47 109 IPR020818 GO:0005524|GO:0006457|GO:0044183
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10100 Seca-Chr3 245431031 245435346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10100 15 91 Calmodulin-binding Proteins AT5G20720 33.735 3.64e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10100 K04078 - gmx:100306026 170.629