Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10098 ATGGCTTCTCTTCCACCTGTGTCACTAAACGTCGTCGGATCAGACACGTACGCAACAGTTTCTAGTTCTGTTACCCCACCGTCACCTCGCCATCAATCTCCGTTACAGAGCCTGAGCCCAAGCATTCTCATCATCGTAACGGTCTTAGCCGTTACTGTTATTGTCTCTCTCGCTCTCTGCTTCCTCCTCCGCCACCTCAACCGTCGCTGCCTCCGTCGTCTCTCCGCTGCGAACTCCGCTTCCTCGACTCCGGCATTCAGCTCTAGCCGCCGCATCTCGCCGGAACTTCCTCCTTCTGCGGCCACCTCCATCATCGACTCGCTCCCTCTGTTCGCTTTCTCCGCCGTCACGCGCAGCTCCGCTGCCGCCGCCGCTGACTGCGCCGTGTGCCTCTCCAAGTTCAACCAGAACGACCTTCTGCGCCTTCTCCCTCTCTGCTGTCATGCTTTCCACGCAGAATGCATCGACACGTGGCTCCGATCCAACCTCTCCTGTCCGCTCTGCCGGTCCTCCATTTTCGCCTCCGATTCGGACCTCGCCAAGGTTCTCCGATCGACGTCCTCTGACAGTTTCCGCATCGAGATAGGAAACGTGAGTCGCCGGGGAACCGCGTCTGACGCCGCCGTCGACGCGCGCGGCGGCTCGAGGTCGAGGTCCTATTCCATTGGATCGTTCGACTATTTCGTTGATGAGGAATCGGAGGTTCCATTCAGCCACGCTCACCGGAGAAGCGTCTCCGATCAGAAAGATGTTCCGGTGACAACGGCGGATGAGTCTCCGGCGATTCAAACGGCGCCTCACGAAGCTGCACTCGCCGGAGAGGTTGCTGGTGTTAGAAGCTGGCTGAAGGAGTACATGGATAGAGTCTCTGCTTCTATATCGTCCAGAACGATGTCGTTTCGAAGCTCTGGAAGGTTCTTCAGTGGTGGGAGTAGTCGTCGAAGCGACGTCGTTCCAGTCGATGTGGATTATGACGTGGAAGGTAACCGAATTGGGGAGGAGATCACAGAAATGTTTCGATGGCTCTCAGGGGTATGA 1038 0.5732 MASLPPVSLNVVGSDTYATVSSSVTPPSPRHQSPLQSLSPSILIIVTVLAVTVIVSLALCFLLRHLNRRCLRRLSAANSASSTPAFSSSRRISPELPPSAATSIIDSLPLFAFSAVTRSSAAAAADCAVCLSKFNQNDLLRLLPLCCHAFHAECIDTWLRSNLSCPLCRSSIFASDSDLAKVLRSTSSDSFRIEIGNVSRRGTASDAAVDARGGSRSRSYSIGSFDYFVDEESEVPFSHAHRRSVSDQKDVPVTTADESPAIQTAPHEAALAGEVAGVRSWLKEYMDRVSASISSRTMSFRSSGRFFSGGSSRRSDVVPVDVDYDVEGNRIGEEITEMFRWLSGV. 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10098 345 FunFam E3 ubiquitin-protein ligase ATL6 91 175 - -
Seca3g10098 345 CDD RING-H2_EL5-like 129 169 - -
Seca3g10098 345 Pfam Ring finger domain 126 169 IPR001841 -
Seca3g10098 345 SUPERFAMILY RING/U-box 111 175 - -
Seca3g10098 345 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Seca3g10098 345 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 34 239 - -
Seca3g10098 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 178 IPR013083 -
Seca3g10098 345 SMART ring_2 127 168 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10098 Seca-Chr3 245399901 245400938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10098 103 175 C3H Transcription Factor Family AT3G18930 54.321 3.82e-22 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10098 K10663 - gmx:100817751 339.347