Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10093 ATGGAAGACTTGTGGGAAAAGTGGATTTCTTCTTTGGAAAAGGGTAGCAACAATTGCATTGGTCAATCTCACATGAACTCTCTGGATGAAGAAAATTTCCTCACAGAAATGGTGCAGCAGCAACAACCAAGTTTCCCTTTTGAGAGTGGTTACCACTCTTCTTCCACCATGCAATGTAACAAAAATGCTTTCACTATCATTGATGGTGGAACCACTACCTTATCCTATGATGAGGGGCAGGGGAAAATGCTCAATAATGATATCTCTAACTCTAACTCTATCATCTCTCATCAAGATGCTGCTTCAAACAATCCTGTACCAAATCCAAACACATTCTTTTTGTGCAAAGAAACATCCCTGAATGACTATATCACTCAACCAGAGGTGAAGCAACAGAACAATAAGAAGTGTAGAAGCTCATCTGAGGTAAATGATCACATAATGGCTGAGAGAAAAAGGAGACAACAACTCACTGAGAGGTTCATAGCACTTTCTGCCACCATACCAGGATTGAAGAAGACAGATAAGGCCCATATACTCCGAGAAGCTATCAATTATATGAAACAACTACAAGAGAGGGTAAAAGAGCTAGAGAATCAAAACCAAAGGAAAACAACTGAATCTACAGTGATATTCATCAAGAAATCCCAGGTCTGCTCAAAAGAGGAAATCACTTCTTCTAATTCTTCATGTGAAACGAACTCTGATAGTGTGGACAGATTCAAGAAAGCATTGCCTCAGGTTGAAGCAAGAGTCTTAGAGAAAGAGAAAGAAGTTCTCATTGGAATCCACTGTGAGAAACAAAAGGACATTGTGCTCAGAATAATGACATTGCTTCAAAATCTTCATCTCTCTCTTGCTAGTAGTAGCGTATTGCCATTTGGGCCCTCCACTCTAAAAGTTACAATTATTGCTCGGATGGATGATGAATACTGCATGAGCGTGAATGATCTAGTAAAAAACCTGAGGCAAGATCTCTTGGAGTTACATGACACTCAAGAGTAA 1005 0.395 MEDLWEKWISSLEKGSNNCIGQSHMNSLDEENFLTEMVQQQQPSFPFESGYHSSSTMQCNKNAFTIIDGGTTTLSYDEGQGKMLNNDISNSNSIISHQDAASNNPVPNPNTFFLCKETSLNDYITQPEVKQQNNKKCRSSSEVNDHIMAERKRRQQLTERFIALSATIPGLKKTDKAHILREAINYMKQLQERVKELENQNQRKTTESTVIFIKKSQVCSKEEITSSNSSCETNSDSVDRFKKALPQVEARVLEKEKEVLIGIHCEKQKDIVLRIMTLLQNLHLSLASSSVLPFGPSTLKVTIIARMDDEYCMSVNDLVKNLRQDLLELHDTQE. 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10093 334 Coils Coil 180 207 - -
Seca3g10093 334 Gene3D - 138 211 IPR036638 GO:0046983
Seca3g10093 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 141 190 IPR011598 GO:0046983
Seca3g10093 334 SMART finulus 147 196 IPR011598 GO:0046983
Seca3g10093 334 Pfam Helix-loop-helix DNA-binding domain 146 191 IPR011598 GO:0046983
Seca3g10093 334 PANTHER BHLH TRANSCRIPTION FACTOR 24 327 - -
Seca3g10093 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 208 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10093 Seca-Chr3 245263536 245267577 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10093 1 326 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 35.673 1.40e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g10093 HLH 1.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10093 - - gmx:100786209 346.665