Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10090 ATGGAGGAGGATAATAATTTCTTCAATCAAAGGCAGAGAATGAACTCTTTCAATTTGCAGCAGCAAGTTTTGTGTCATGAAACTGAAAGCCACTATCCCTACCCTTCTTTATCCAACACTCTTGTTGAGGCTTCCACCACCACCAATTTGGAAAGATCTCATCTTTATGTCCAAAACAACCCTTCAACTACCATTCTTGACAAGTTCATGAGTGAGACAGCATCTTTTCACAGCTTTGGCACTAACAGCAGCCCCAAAGATGCTGCAGAAAATGCTCTATCCAGCCACATTTTGCCTTTTATGAACTCAACTACTGTGGAACCTGTCAGCAACATGAAACAAGGCTCTGTTTTGGGGTCCTTCAAAAGGAACCATAACTGGAAACCAGGGACTCACAAGAAGGTTAGAAGCTCTGCTGAGACTGCAGGTCATATAGAGGCAGAGAGAAAAAGAAGACAGAAAATGACTCAGAACTTCATAGCACTTTCAGCCATCATTCCTGGGTTGAAAAAGACAGACAAGTCTTATATACTTCAAGAAGCAATCAAATATGTGAATCAACTTCAAGAGCGTGTAAGAGAACTAGAAACAGAGAACGAAAAGATAAATGCACATTCAGTAATGTTGAGCAAGAAACTCATCAGGCTCCCCATGAATGAAGACTCAACCACCACAAGTGAAACAAACTTCGTTGGTGACACTAATAGATTTTTTCTTGAAGCACTGCCTGAGGTCACAGCAAGAGTCTCAGAGAAGAATGTGCTCATTGCAATCAAAGTGTCGTTGTGCACAAAATACTAA 801 0.4095 MEEDNNFFNQRQRMNSFNLQQQVLCHETESHYPYPSLSNTLVEASTTTNLERSHLYVQNNPSTTILDKFMSETASFHSFGTNSSPKDAAENALSSHILPFMNSTTVEPVSNMKQGSVLGSFKRNHNWKPGTHKKVRSSAETAGHIEAERKRRQKMTQNFIALSAIIPGLKKTDKSYILQEAIKYVNQLQERVRELETENEKINAHSVMLSKKLIRLPMNEDSTTTSETNFVGDTNRFFLEALPEVTARVSEKNVLIAIKVSLCTKY. 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10090 266 SMART finulus 145 194 IPR011598 GO:0046983
Seca3g10090 266 MobiDBLite consensus disorder prediction 121 143 - -
Seca3g10090 266 Gene3D - 141 217 IPR036638 GO:0046983
Seca3g10090 266 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 139 188 IPR011598 GO:0046983
Seca3g10090 266 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 210 IPR036638 GO:0046983
Seca3g10090 266 Coils Coil 178 205 - -
Seca3g10090 266 PANTHER BHLH TRANSCRIPTION FACTOR 15 259 - -
Seca3g10090 266 Pfam Helix-loop-helix DNA-binding domain 144 189 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10090 Seca-Chr3 245210981 245216283 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10090 71 265 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 35.533 6.31e-24 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g10090 HLH 5.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10090 - - psat:127076674 171.014