Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10089 ATGTTCCGCCGCGCAACAGCAACCCTCTTGGCGCGCGCCGCCCCCAGCCGCCGCTTCTCTACCGATGTGGCAGCGGCAGCGACCACCACGGACTCGAGCTTCGTGGAGGCGTGGAAGAAAGTGAGCCCCAACATCGACCCACCCAAGACTCCCCTCGCCTACATGAAGCCTCGTCCCCCTACTCCTTCTACCCTCCCTTCTAAGCTCACCGTCAATTTCGTCCTTCCCTACGCTTCCCAATTGTCCGCAAAAGAGGTTTGGGGATTTCCTTCATCAAGTAATCCTGTAGGATGTCAGGTTGATATGGTCATAGTACCAGCAACAACTGGTCAGATGGGTGTTCTCCCAGGACATGTAGCAACAATCGCAGAGTTGAAACCTGGGGTCCTATCTGTACATGAAGGGAATGATGTGACCAAATATTTTGTCAGCAGCGGCTTTGCTTTCATCCATGCAAACTCTGTTGCTGATATAATAGCTGTTGAGGCTGTACCAGTAGATCGAATTGATGCAAACCTAGTCCAGAAAGGTCTTCAAGAGTTCACTCAGAAGCTGAGTACAGCCACAACTGATTTGGAGAAAGCTGAAGCTCAGATTGGAGTTGATGTGCATAGCGCCCTCAACGCAGCTCTTTCAGCCTAA 642 0.5171 MFRRATATLLARAAPSRRFSTDVAAAATTTDSSFVEAWKKVSPNIDPPKTPLAYMKPRPPTPSTLPSKLTVNFVLPYASQLSAKEVWGFPSSSNPVGCQVDMVIVPATTGQMGVLPGHVATIAELKPGVLSVHEGNDVTKYFVSSGFAFIHANSVADIIAVEAVPVDRIDANLVQKGLQEFTQKLSTATTDLEKAEAQIGVDVHSALNAALSA. 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10089 213 Pfam ATP synthase, Delta/Epsilon chain, beta-sandwich domain 99 155 IPR020546 GO:0015986
Seca3g10089 213 Coils Coil 178 198 - -
Seca3g10089 213 CDD F1-ATPase_delta 99 206 IPR001469 GO:0015986|GO:0045261|GO:0046933
Seca3g10089 213 Hamap ATP synthase epsilon chain [atpC]. 67 201 IPR001469 GO:0015986|GO:0045261|GO:0046933
Seca3g10089 213 SUPERFAMILY Epsilon subunit of F1F0-ATP synthase N-terminal domain 97 164 IPR036771 -
Seca3g10089 213 Gene3D - 170 212 - -
Seca3g10089 213 Gene3D - 59 169 IPR036771 -
Seca3g10089 213 PANTHER ATP SYNTHASE DELTA/EPSILON CHAIN 29 212 IPR001469 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10089 Seca-Chr3 245195334 245199809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10089 1 213 Primary Pumps ATPases AT5G47030 66.197 2.12e-100 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10089 K02134 - gmx:100799603 302.367