Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10086 ATGGCATCAATGGATGAGTCATGGGAATACTTGCTTTCTGATATGGAAATGGATGATTGTTATTTATTCAATGAATACAATTACATGAACTCTTTTGAGGAAGAGTTAATCATCAATGGAGAGATTTCACTACAATCAGAACTATCTTTGGAAGGCCAATCTTCCAATTCAAATTCCACTACTCAAAACATCCATGTTGCTGTGGCAGCTGGCAATAACAACACTATGAACATTGCTTCCTCGGAGTCTTTAGAGGAATGCACCGTTGTAGTGCCAAATAACATTCCCAAGGAAACACACAAAAAACATTATGATGATGAACAATCAAAGGAGGACCGAGAGGAACTACAAAATAGAAAATCCAAGAGGTGTAGAAGCTCTTCTCAGATACAAGATCACATTATCGCTGAGAGAAAGAGAAGAGAGAATCTCACCAAATTATTCATAGCACTTTCAGCGGTTGTTCCTGGCTTGAAAAGGATGGATAAGGCTTCTATCATAAAAAACACTATCGAATATGTGAAATGTCTTCAGAAGAGTGTAAAAGATTTAGAGGAGCAGACCAAGAAAAGAAAAACAGAATCTGTGGCATGCTTCAAAAATGACAAAGCCGTTGCTGATGACTTTGAACCTACAAAGAGATTCCCCATTGTTGAAGCAAGAGTCTCAGCAAAAGATCTACTCATCAGAGTTATGTGTGAGAATCGAAAGGGCATTGTAATTAAACTATTGACCAAGCTTGAAGCTCATAATCTCTCTGTAATTTATAGCAATGTTTTGCCATTTGGAAATTCTACTCTGAACATTGACATCATTGCTCAGGTGGACCACGAAGGACTCAGCATGACAATGGACGACCTAGTGGAAAATGTGGTCAAGGATTTGTTGGGGTGTTGTAATTGA 903 0.3821 MASMDESWEYLLSDMEMDDCYLFNEYNYMNSFEEELIINGEISLQSELSLEGQSSNSNSTTQNIHVAVAAGNNNTMNIASSESLEECTVVVPNNIPKETHKKHYDDEQSKEDREELQNRKSKRCRSSSQIQDHIIAERKRRENLTKLFIALSAVVPGLKRMDKASIIKNTIEYVKCLQKSVKDLEEQTKKRKTESVACFKNDKAVADDFEPTKRFPIVEARVSAKDLLIRVMCENRKGIVIKLLTKLEAHNLSVIYSNVLPFGNSTLNIDIIAQVDHEGLSMTMDDLVENVVKDLLGCCN. 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10086 300 Gene3D - 126 198 IPR036638 GO:0046983
Seca3g10086 300 Coils Coil 167 194 - -
Seca3g10086 300 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 128 177 IPR011598 GO:0046983
Seca3g10086 300 MobiDBLite consensus disorder prediction 96 130 - -
Seca3g10086 300 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 193 IPR036638 GO:0046983
Seca3g10086 300 Pfam Helix-loop-helix DNA-binding domain 132 178 IPR011598 GO:0046983
Seca3g10086 300 SMART finulus 134 183 IPR011598 GO:0046983
Seca3g10086 300 MobiDBLite consensus disorder prediction 91 130 - -
Seca3g10086 300 PANTHER BHLH TRANSCRIPTION FACTOR 20 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10086 Seca-Chr3 245117903 245121692 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10086 113 291 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22750 45.178 6.05e-41 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g10086 HLH 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10086 - - gmx:100815351 243.432