Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10083 ATGGCATCAATGGATGAGTCATGGGAATATTTGCTTTCTGATTTGGAAATGATGGATGATTGTCATTTATTCAATGAATACATGAACTCTTTTGAGGAAGAGTTAATCAACAATGGAGAGATTTCATTACAATCAGAACTATCTTTGGAAGGCCAATCTTCCAGTTCAAATTTCACTACTGAAAACATCCATGTTGCTGCCGCAGACAATAACAACACTATGAACAATTCACTTTCGGAAGAGAACACTGATTTTAGTCTCAAACAACATGCTTCCTCGGAGTCTTTAGAGGAATGCACCGTTGTAGTGCCAAATAATATTCCCAAGGAAACACACGAAAAACATTATGATGATGAACAATCAAAGGAGAACCAAGAGGAACTACAAAATAGAAAATCCAAGAGGTGTAGAAGCTCTTCTCAGATACAAGATCACATTATCGCTGAGAGAAAGAGAAGAGAGAATCTCACCAAATTATTCATAGCACTTTCAGCGGTAGTTCCTGGCTTGAAAAGGATGGATAAGGCTTCTATCATCAAAAACACTATCGAATATGTGAAATGTCTTCAGAAGAGTGTAAAAGATTTAGAGGAGCAAACCAAGAAAAGAAAAACAGAATCTGTGGCATGCTTCAAAAATGACAAAGTCGTTGCTGATGACTCTGAACCTACAAAGAGATTCCCCATTGTTGAAGCAAGAGTCTCAGCAAAAGATCTACTCATCAGAGTTATGTGTGAGAATCGAAAGGGCATTGTAATTAAACTATTGACCAAGCTTGAAGCTCATAATCTCTCTGTACTTTGTAGCAATGTTTTGCCATTTGGGAATTCTACTCTTAACATTGACATCATTGCTCAGGTGGACCACGGAGGATTCAGCATGACAATGGACGACCTAGTGGAAAATGTGATCAAGGATTTGTTGGGGTGTTGTAATAACTTGCAACAATAA 951 0.3775 MASMDESWEYLLSDLEMMDDCHLFNEYMNSFEEELINNGEISLQSELSLEGQSSSSNFTTENIHVAAADNNNTMNNSLSEENTDFSLKQHASSESLEECTVVVPNNIPKETHEKHYDDEQSKENQEELQNRKSKRCRSSSQIQDHIIAERKRRENLTKLFIALSAVVPGLKRMDKASIIKNTIEYVKCLQKSVKDLEEQTKKRKTESVACFKNDKVVADDSEPTKRFPIVEARVSAKDLLIRVMCENRKGIVIKLLTKLEAHNLSVLCSNVLPFGNSTLNIDIIAQVDHGGFSMTMDDLVENVIKDLLGCCNNLQQ. 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10083 316 Coils Coil 179 206 - -
Seca3g10083 316 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 204 IPR036638 GO:0046983
Seca3g10083 316 Gene3D - 139 210 IPR036638 GO:0046983
Seca3g10083 316 PANTHER BHLH TRANSCRIPTION FACTOR 13 305 - -
Seca3g10083 316 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 140 189 IPR011598 GO:0046983
Seca3g10083 316 SMART finulus 146 195 IPR011598 GO:0046983
Seca3g10083 316 Pfam Helix-loop-helix DNA-binding domain 144 190 IPR011598 GO:0046983
Seca3g10083 316 MobiDBLite consensus disorder prediction 111 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10083 Seca-Chr3 244980846 244983148 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10083 125 303 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22750 45.685 3.90e-42 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g10083 HLH 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10083 - - gmx:100815351 263.077