Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10081 ATGGCATCAATGGATGAGTCATGGGAATATTTGCTTTCTGATATGGAAAATATGGACGATTGTCATTTATTCAATGAATACATGAACTCTTTTGAGGAAGAGTTAATCAACAATGGAGAGATTTCACTACAATCAGAACTATCTTTGGAAGGCCAATCTTCCAATTCAAATTTCACTACTCAAAACATCCATGTTGCTGTGGCAGCTGGCAATAACAACACTATGAACATTGCTTCCTCGGAGTCTTTAGAGGAATGCACCGTTGTAGTGCCAAATAATATTCCCAATGAAACACACGAAAAACATTATGATGATGAACAATCAAAGGAGAACCAAGAGGAACTACAAAATAGAAAATCCAAGAGGTGTAGAAGCTCTTCTCAGATACAAGATCACATTATCGCTGAGAGAAAGAGAAGAGAGAATCTCACCAAATTATTCATAGCACTTTCAGCGGTTGTTCCTGGCTTGAAAAGGATGGATAAGGCTTCTATCATAAAAAACACTATCGAATATGTGAAATGTCTTCAGAAAAGTGTAAAAGATTTAGAGGAGCAAACCAAGAAAAGAAAAACAGAATCTGTGACATGTTTCAAAAATGACAAAGCCGTTGTTGATGACTCTGAACCTACAAAGAGATTCCCCATTGTTGAAGCAAGAGTCTCAGCAAAAGATCTACTCATCAGAGTTATGTGTGAGAATCGAAAGGGCATTGTAATTAAACTATTGACCAAGCTTGAAGCTCATAATCTCTCTGTACTTTGTAGCAATGTTTTGCCATTTGGGAATTCTACTCTGAACATTGACATCGTTGCTCAGGTGGACCACGAAGGATTCAGCATGACAATGGACGACCTAGTGGAAAATGTGATCAAGGATTTGTTGGGGTGTTGTAATAACTTGCAACAATAA 912 0.375 MASMDESWEYLLSDMENMDDCHLFNEYMNSFEEELINNGEISLQSELSLEGQSSNSNFTTQNIHVAVAAGNNNTMNIASSESLEECTVVVPNNIPNETHEKHYDDEQSKENQEELQNRKSKRCRSSSQIQDHIIAERKRRENLTKLFIALSAVVPGLKRMDKASIIKNTIEYVKCLQKSVKDLEEQTKKRKTESVTCFKNDKAVVDDSEPTKRFPIVEARVSAKDLLIRVMCENRKGIVIKLLTKLEAHNLSVLCSNVLPFGNSTLNIDIVAQVDHEGFSMTMDDLVENVIKDLLGCCNNLQQ. 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10081 303 Gene3D - 124 197 IPR036638 GO:0046983
Seca3g10081 303 MobiDBLite consensus disorder prediction 97 128 - -
Seca3g10081 303 Pfam Helix-loop-helix DNA-binding domain 131 177 IPR011598 GO:0046983
Seca3g10081 303 Coils Coil 166 193 - -
Seca3g10081 303 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 127 176 IPR011598 GO:0046983
Seca3g10081 303 SMART finulus 133 182 IPR011598 GO:0046983
Seca3g10081 303 MobiDBLite consensus disorder prediction 95 128 - -
Seca3g10081 303 PANTHER BHLH TRANSCRIPTION FACTOR 22 292 - -
Seca3g10081 303 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 191 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10081 Seca-Chr3 244947857 244949720 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10081 112 290 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22750 45.178 6.24e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g10081 HLH 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10081 - - gmx:100815351 247.284