Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10075 ATGGCATCAATGGATGAGTCATGGGAAAAATTGCTTTCTGATTTGGAAATGGATGATAGCCATTTACTGAGTGAATACAACGTTGAGGAAGAGTTAATCATCAATGAAGAGAATTCACTACAATATAATTGGGAAGTTCAATCTTGTATTCCAAATTTCACTACTGAAAGTGAAAGCACCTTCGTTGCTGTAGCCAATAGCAACACTATGGAGGACAATTCATCTTTGGAAGAGAACACTGATTTTGGTCTCAAACATGTTGCTGCTTTTGCAGAGGAACCAACTCTGTTCTCGTCTTCAATGTCTTATACTCTGTCTTTTGAGCAATCCATTGCAGTGCCGAATAAAGAAACATGCCAAAAACATGATCATGATGAACAATCAAAGGAGATCCGAGAGGAACTACGCAGTAGAAAATCCAAGAGGTGTAGAAGCTCTTCTCAGACACAAGATCACATTATCGCTGAGAGAAAGAGAAGAGAGAATCTCACCAAATTGTTCATTGAACTTTCAGCCATTATTCCTGGATTGAAAAAGATAGATAAGGCTTCTATCGTCAACAACACTATCGATTATGTGAAATATCTTCAAAAGAGTGTAAAAGATTTAGAGGAGCGGAACATGAAAAGAAAGACAGAATCCGTCGCATGCTTCAAAAATGACAAATCTAGTGTTGTCGTTGCTGATGACTCTGAACCTACAAAGAGATTCCCCATTGTTGAAGCAAGAGTCTCAGCAAAAGATGTACTCTTCAGAGTTATGTGTGAGAAACAAAAGGACATTATAATTAAGTTATTGGCCAAGCTTAAAGCTCATAATCTCTCTGTACTTTGTAGCAATGTTTTGCCATTTGGGAATTCTACTCTGAACATTAACATCATTGCTCAGGTGGACCACAAAGGATTCAGCATGACAATGGACGACCTAGTGGAAAATGTGATCAAGGATTTGTTGGGGTGTTAG 963 0.3821 MASMDESWEKLLSDLEMDDSHLLSEYNVEEELIINEENSLQYNWEVQSCIPNFTTESESTFVAVANSNTMEDNSSLEENTDFGLKHVAAFAEEPTLFSSSMSYTLSFEQSIAVPNKETCQKHDHDEQSKEIREELRSRKSKRCRSSSQTQDHIIAERKRRENLTKLFIELSAIIPGLKKIDKASIVNNTIDYVKYLQKSVKDLEERNMKRKTESVACFKNDKSSVVVADDSEPTKRFPIVEARVSAKDVLFRVMCEKQKDIIIKLLAKLKAHNLSVLCSNVLPFGNSTLNINIIAQVDHKGFSMTMDDLVENVIKDLLGC. 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10075 320 MobiDBLite consensus disorder prediction 117 155 - -
Seca3g10075 320 PANTHER BHLH TRANSCRIPTION FACTOR 23 315 - -
Seca3g10075 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 148 208 IPR036638 GO:0046983
Seca3g10075 320 Gene3D - 145 218 IPR036638 GO:0046983
Seca3g10075 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 147 196 IPR011598 GO:0046983
Seca3g10075 320 Pfam Helix-loop-helix DNA-binding domain 150 197 IPR011598 GO:0046983
Seca3g10075 320 SMART finulus 153 202 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10075 Seca-Chr3 244872412 244875565 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10075 132 313 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22750 45.226 9.02e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g10075 HLH 5.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10075 - - gmx:100799087 253.832