Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10074 ATGGCATCAATGGATGAGTCATGGGAAAATTTGCTTTCTGATCTGGAAATGGATGATTGTCATTTATTCAATGAATACATGAACTCTTTTGAGGAAGAGTTAAGCAACAATGGAGAGATTTCATTACAATCAGAACTATCTTTGGAAGGCCAATCTTCCAGTTCAAATTTCACTACTGAAAACATCCATGTTGCTGCCGCAGACAATAACAACACTATGAACAATTCACTTTCGGAAGAGAACACTGATTTTAGTCTCAAACAACATGAGTCTTTAGAGGAATGCACCGTTGTAGTGCCAAATAATATTCCCAAGGAAACACACGATAAACATTATGATGATGAACAATCAAAGGAGAACCAAGAGGAACTACAAAATAGAAAATCCAAGAGGTGTAGAAGCTCTTCTCAAATACAGGATCACATTATCGCTGAGAGAAAGAGAAGAGAGAATCTCACCAAATTGTTCATAGCACTTTCTGCGGTTATTCCTGGCTTGAAAAGGATGGACAAGGCTTCTATAATCAAGAAGGCTATCGATTATGTGAAATGTCTTCAGAATCGAGTAAAAGATTTAGAAGAGCAAAGCAAGAAAAGAAAGACAGAATCTATGGTATGTTTCAAGGACGACAAATCTAATAGGGTTGTTGCTGTTGCTAACGACCCTGAAGCTATGAAGAGATTCCCCAATATTGAAGCAAGGGTCTCAGCAAAAGATGTACTCATCGTAGTAATGTGTGAGAAACAAAAGGACATTGCACTCAAACTACTGGCCAAGCTTCAAGCTCATAATCTCTCTGTCGTGGACCACGAAGATTTCAGCATGACAATGGACGCCCTAGTGAAAAATGTGATCGAGGATTTGTTGGGGGTGTTGTAA 879 0.3868 MASMDESWENLLSDLEMDDCHLFNEYMNSFEEELSNNGEISLQSELSLEGQSSSSNFTTENIHVAAADNNNTMNNSLSEENTDFSLKQHESLEECTVVVPNNIPKETHDKHYDDEQSKENQEELQNRKSKRCRSSSQIQDHIIAERKRRENLTKLFIALSAVIPGLKRMDKASIIKKAIDYVKCLQNRVKDLEEQSKKRKTESMVCFKDDKSNRVVAVANDPEAMKRFPNIEARVSAKDVLIVVMCEKQKDIALKLLAKLQAHNLSVVDHEDFSMTMDALVKNVIEDLLGVL. 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10074 292 SMART finulus 142 191 IPR011598 GO:0046983
Seca3g10074 292 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 139 202 IPR036638 GO:0046983
Seca3g10074 292 Coils Coil 175 202 - -
Seca3g10074 292 MobiDBLite consensus disorder prediction 104 138 - -
Seca3g10074 292 Gene3D - 135 206 IPR036638 GO:0046983
Seca3g10074 292 PANTHER BHLH TRANSCRIPTION FACTOR 19 269 - -
Seca3g10074 292 Pfam Helix-loop-helix DNA-binding domain 140 186 IPR011598 GO:0046983
Seca3g10074 292 MobiDBLite consensus disorder prediction 99 138 - -
Seca3g10074 292 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 185 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10074 Seca-Chr3 244843434 244847351 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10074 116 281 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.011 1.12e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g10074 HLH 8.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10074 - - gmx:100815351 219.935