Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10073 ATGGTGAAGACGACACCTCGCGATGAGCACGACGATTGGGGTGGTGCAGCGGCAGGGACATGGTGGCTCCAACGTGGTTCCGACTACGCACGCGACGGAGGAGGATGCACTTCCTGTAGCGTTATGATGGTTAACGGACTGCAAGTGTGGTGGGCCAATACTGAAAATGATTGCCATTTATTCAATGAATACAACATCATGAACTCTTTTGAGGAAGAATTAATCATCAATGGAGAGAATTTACTACAATCAGAACTATCTTTGGAAGGCCAATCTTCCAATTCAAATGTCATTACTGAAAACACCCATGTTGCTGTGGCAGCTGGCAATAACAATACTATGAACAATTCATCTTTGGAAGAGAACACTGGAGATTTTAGTCTCAACCAACATGCTTCCTCGGAGGAACCTTTATTGTTGTCCCCAATGTCCCACATTCTCTCTTTAGAGGAATCGACTGTTGTAGCGCCAAATAGTATTCCCAAGGAAACACATGATGATCAACATTCAAAGGAGAATCGAGAGGAACTACAAAATAGAAAATCCAAGAGGTGTAGAAACTCTTCTCAGATACAAGATCACATTATCGCTGAGAGAAAGAGAAGAGAGAATCTCACCAAATTGTTCGTAGCACTCTCAGCGGTTATTCCTGGCTTAAAAAAGATGGACAAGGCTTCTATCATGAAGAACGCCATCAATTATGTGAAATATCTTCAGAAGAGTGTAAAAGATTTACAGGAGCAGAACATGAAAAGAAAGAATATGGAATCCGTGGTATGCTTAAGAAACGAAAAATCCAATATTGTAACTGTTGCTGACAACTATAAACCACTGAATAGATCCCCCATTATTGAAGTAAGGGTCCTAGCAAAAGACGTATTCATCAGAGTTGTGTGTGAGAATCGAAAGAACGTTCTAGTCAAGCTACTGGCCAAGCTTGAAGCTCATAATCTCTCTGTAGTTGGTAGCAATACTATACCATTTGGGAATTCTACTCTAAACATTACCATCACTGCTCGGGTGGACAATGATTTCAGCATGACAAAGGACGAACTAGTGAAAAAATTGATGGAGGATTTGTTGGAGACTTATGATTAA 1098 0.4089 MVKTTPRDEHDDWGGAAAGTWWLQRGSDYARDGGGCTSCSVMMVNGLQVWWANTENDCHLFNEYNIMNSFEEELIINGENLLQSELSLEGQSSNSNVITENTHVAVAAGNNNTMNNSSLEENTGDFSLNQHASSEEPLLLSPMSHILSLEESTVVAPNSIPKETHDDQHSKENREELQNRKSKRCRNSSQIQDHIIAERKRRENLTKLFVALSAVIPGLKKMDKASIMKNAINYVKYLQKSVKDLQEQNMKRKNMESVVCLRNEKSNIVTVADNYKPLNRSPIIEVRVLAKDVFIRVVCENRKNVLVKLLAKLEAHNLSVVGSNTIPFGNSTLNITITARVDNDFSMTKDELVKKLMEDLLETYD. 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10073 365 ProSiteProfiles ACT domain profile. 294 365 IPR002912 -
Seca3g10073 365 Pfam Helix-loop-helix DNA-binding domain 193 239 IPR011598 GO:0046983
Seca3g10073 365 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 187 252 IPR036638 GO:0046983
Seca3g10073 365 Gene3D - 186 260 IPR036638 GO:0046983
Seca3g10073 365 MobiDBLite consensus disorder prediction 162 190 - -
Seca3g10073 365 MobiDBLite consensus disorder prediction 155 190 - -
Seca3g10073 365 CDD ACT 295 356 - -
Seca3g10073 365 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 189 238 IPR011598 GO:0046983
Seca3g10073 365 PANTHER BHLH TRANSCRIPTION FACTOR 65 361 - -
Seca3g10073 365 SMART finulus 195 244 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10073 Seca-Chr3 244747404 244754245 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10073 142 356 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22750 43.983 3.40e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g10073 HLH 6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10073 - - gmx:100799087 257.684