Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10072 ATGGAGCAAAAAGTAGAACAAGTTTGCCATATTTTGATATCAATGGATGAATCATGGGAAAAATGGCTTTTTGATATGGAAAATGATTGCCATTTATTCAATGAATACAACATCATGAACTCTTTTGAGGAAGAATTAATCATCAATGGAGAGAATTTACTACAATCAGAACTATCTTTGGAAGGCCAATCTTCCAATTCAAATGTCATTACTGAAAACACCCATGTTGCTGTGGCAGCTGGCAATAACAATACTATGAACAATTCATCTTTGGAAGAGAACACTGGAGATTTTAGTCTCAACCAACATGCTTCCTCGGAGGAACCTTTATTGTTGTCCCCAATGTCCCACATTCTCTCTTTAGAGGAATCGACTGTTGTAGCGCCAAATAGTATTCCCAAGGAAACACATGATGATCAACATTCAAAGGAGAATCGAGAGGAACTACAAAATAGAAAATCCAAGAGGTGTAGAAACTCTTCTCAGATACAAGATCACATTATCGCTGAGAGAAAGAGAAGAGAGAATCTCACCAAATTGTTCATAGCACTTTCTGCGGTTATTCCTGGCTTAAAAAAGATGGACAAGGCTTCTATCATTAAGAACGCCATCAATTATGTGAAACATCTTCAGAAGAGTGTAAAAGATTTAGAGGAGCAGAACATGAAAAGAAAGATGGAATCCGTGGTAAGCTTAAAAAACGAAAATTCCAATATTGTAACTGTTGCTGACAACTCTCAACCTATGAATAGATCCCCCATTATTGAAGTAAGGGTCTTAGCAAAAGACGTATTCATCAGAGTTTTGTGTGAGAATCAAAAGGAGGTTCTAGTCAATTTACTGGCCAAGCTTGAAGCTCATAATCTCTCTGTAGTTGGTAGCAATACTATATCATTTGGGAATTCTACTCTAAACATTACCATCACTGCTCGGGTGGACCATGATTTCAGCATGACAAAGGACGAGCTAGTGAAAAAATTGATGGAGGATTTGTTGGAGACTTATGATTAA 1011 0.3709 MEQKVEQVCHILISMDESWEKWLFDMENDCHLFNEYNIMNSFEEELIINGENLLQSELSLEGQSSNSNVITENTHVAVAAGNNNTMNNSSLEENTGDFSLNQHASSEEPLLLSPMSHILSLEESTVVAPNSIPKETHDDQHSKENREELQNRKSKRCRNSSQIQDHIIAERKRRENLTKLFIALSAVIPGLKKMDKASIIKNAINYVKHLQKSVKDLEEQNMKRKMESVVSLKNENSNIVTVADNSQPMNRSPIIEVRVLAKDVFIRVLCENQKEVLVNLLAKLEAHNLSVVGSNTISFGNSTLNITITARVDHDFSMTKDELVKKLMEDLLETYD. 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10072 336 Coils Coil 200 235 - -
Seca3g10072 336 Gene3D - 159 235 IPR036638 GO:0046983
Seca3g10072 336 Pfam Helix-loop-helix DNA-binding domain 165 211 IPR011598 GO:0046983
Seca3g10072 336 MobiDBLite consensus disorder prediction 127 162 - -
Seca3g10072 336 PANTHER BHLH TRANSCRIPTION FACTOR 26 332 - -
Seca3g10072 336 SMART finulus 167 216 IPR011598 GO:0046983
Seca3g10072 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 227 IPR036638 GO:0046983
Seca3g10072 336 MobiDBLite consensus disorder prediction 134 162 - -
Seca3g10072 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983
Seca3g10072 336 ProSiteProfiles ACT domain profile. 265 336 IPR002912 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10072 Seca-Chr3 244732116 244739479 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10072 147 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 43.590 1.16e-43 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g10072 HLH 4.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10072 - - gmx:100799087 265.774