Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10069 ATGGATGAGTCATGGGAAAAATGGCTTTTTGATATGGAAATGGATGATTGTCATTTATTCAATGAATATAACAACATGAACTCTTTTGAGGAAGAGTTAATTAGCAATGGAGAGAACACCCAAGTTGCTACCGCAGGCAATAACAACACTATGGACAATTCATCTTTGGAAGAGAACACTGGAGGTTTTAGTCTCAAACAACATGCTTCCTCGGAGGAACAACCTTTGTTAATGTCCCACATTCTGTCTTTAGAGGAATCCACTGTTAATGATGTAATTCCCAAGGAAACACACAAAAAACATTATGATGATGAACAATCAAAGGAGAAACGAGAGGAACTACAAAATAGAAAATCCAAGAGGTGTAGAAGCTCTTCTCAGATACAAGATCACATTATTGCTGAGAGAAAGAGAAGAGAGAATCTCACCAAAATGTTCATAGCACTTTCAGCGGTTATTCCTGGCTTGAAAAAGATGGACAAGGCATCTATCGTTAACAACGCTATCAATTATGTGAAATATCTTCAGAAGAGTGTGAAAGATTTAGAGGAAGAGAACAAGAAAAGAGAGGTAGAATCAGTAGTATGCTTGAAAAACGACAAATCCTCCAATATTGAAGCTACAAAGAGATTCCCCATTATTGAAGCAAGGGTATTAGCAAAAGATGTATTCATCAGAGTTGTGTGTGAGAATCGAGAGGGCATTACAGTCAAGCTACTGGCCAAGCTTGAAACGCATAATCTCTCTTTAGTTTGTAGCAATGTTGTGCCATTTGGGAATTCTACTCTAAACATTACCATCACTGCTCAGGTAGTGGACCACGAATTCAGAATGACAAAGGACGACCTGGTGAAAAAATTGATTGAGGATTTGTTGGAGATCTTCTAA 888 0.3784 MDESWEKWLFDMEMDDCHLFNEYNNMNSFEEELISNGENTQVATAGNNNTMDNSSLEENTGGFSLKQHASSEEQPLLMSHILSLEESTVNDVIPKETHKKHYDDEQSKEKREELQNRKSKRCRSSSQIQDHIIAERKRRENLTKMFIALSAVIPGLKKMDKASIVNNAINYVKYLQKSVKDLEEENKKREVESVVCLKNDKSSNIEATKRFPIIEARVLAKDVFIRVVCENREGITVKLLAKLETHNLSLVCSNVVPFGNSTLNITITAQVVDHEFRMTKDDLVKKLIEDLLEIF. 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10069 295 Coils Coil 165 192 - -
Seca3g10069 295 PANTHER BHLH TRANSCRIPTION FACTOR 14 291 - -
Seca3g10069 295 MobiDBLite consensus disorder prediction 91 128 - -
Seca3g10069 295 Gene3D - 125 196 IPR036638 GO:0046983
Seca3g10069 295 SMART finulus 132 181 IPR011598 GO:0046983
Seca3g10069 295 MobiDBLite consensus disorder prediction 44 70 - -
Seca3g10069 295 Pfam Helix-loop-helix DNA-binding domain 130 176 IPR011598 GO:0046983
Seca3g10069 295 MobiDBLite consensus disorder prediction 89 128 - -
Seca3g10069 295 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 175 IPR011598 GO:0046983
Seca3g10069 295 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 129 190 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10069 Seca-Chr3 244595338 244601008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10069 53 287 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 37.405 7.87e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g10069 HLH 2.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10069 - - gmx:100815351 274.633