Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10065 ATGGCACCGACGGATTCTTCGTCTTCAGATGGAGATGCTTCCTCCCCTCTTCCCTCTATTCTCGAAACTCCTTTCAAGATTGTCGACGGTTCCCAAAGCTCCGTTGCTGGCAACCCTGATGAGATCGCGAAGCTATTTCCAAACATGTTCGGGCAACCATCGGCAATGTTGGTACCGAGTGATTCGGACACTATGCAGACGAATCAAGAATTGGAGACTGGTGTGACTGCTGGATTTGCTTTACAGGTTTACAATTTTGCTCCAAGAAGGTCTGTGGAGAGTGCGTTCAAGGTGTTTGAAACTATTCCAGAGAGAAACTTGGTTTCCACACTTTCTTCCAAACTCTCTCTATCGGAAACGCTAACGGAAGAGAAGACGGAGCCATTGCTGGTGGCAGCTGCTTTACAGATTGGAGATCTTGGATTGGCAATTGTCATACAGCAACCTACTGCTCGTAGTGTTATAGGTACACCAGAATTCATGGCCCCTGAGCTTTATGAGGAAGAATACAACGAACTTGTTGACATATATTCCTTTGGCATGTGCATCTTGGAAATGATCATTAAGTTTCATGATGGAGACCTTGTTGTTTTCTTTAAAGTCCCTCTGTATCGTGGGTGGATAGTTGATTCTCAAGATTATGTTCAGGAACTATTTGCTAAAATGTCTCAAAGTGATGTAAAGATGGCGGTGGCCCTCGATGACGGAAATTGCGTTGGGCAGGACGCGAAGGTGACGCTGTGGGACGACGTTGCACAGAAGGGACGACACTGTGGGATCGAGGATGAAAACCTCAATCTTTGA 804 0.4602 MAPTDSSSSDGDASSPLPSILETPFKIVDGSQSSVAGNPDEIAKLFPNMFGQPSAMLVPSDSDTMQTNQELETGVTAGFALQVYNFAPRRSVESAFKVFETIPERNLVSTLSSKLSLSETLTEEKTEPLLVAAALQIGDLGLAIVIQQPTARSVIGTPEFMAPELYEEEYNELVDIYSFGMCILEMIIKFHDGDLVVFFKVPLYRGWIVDSQDYVQELFAKMSQSDVKMAVALDDGNCVGQDAKVTLWDDVAQKGRHCGIEDENLNL. 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10065 267 MobiDBLite consensus disorder prediction 1 21 - -
Seca3g10065 267 Gene3D Transferase(Phosphotransferase) domain 1 99 231 - -
Seca3g10065 267 Pfam Protein kinase domain 129 189 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g10065 267 ProSiteProfiles Protein kinase domain profile. 1 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g10065 267 MobiDBLite consensus disorder prediction 1 16 - -
Seca3g10065 267 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 136 187 - -
Seca3g10065 267 SUPERFAMILY Protein kinase-like (PK-like) 135 189 IPR011009 -
Seca3g10065 267 SMART serkin_6 25 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10065 Seca-Chr3 244566714 244569015 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10065 135 187 MAP Kinase Kinase Kinase AT1G49160 75.472 2.72e-22 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Seca3g10065 Pkinase 6.1e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10065 K08867 - zof:122005968 104.375