Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10060 ATGGAGATGGTGAGCACAGTGCAAGTTGTTTTTGGAGCAGTTTTGGTGCTGTTGATCCATGTTTTGAATGTTTTGGTTTTGAAGCCAAGATCACTGAGAGCAAAGCTTCAGAGGCAGGGGATTCATGGACCTTCCCCTCACTTCTACCTTGGTAACATCCCACAAATGAAGAGCCTTTTACTCCAATCTCAGTCAACAGCAACCACACAAACACAAGACATAGTCAAAGACAAAGATGTTTCTCTTTCCATTTCTCACACCTGGCCAGCCACTGTGTTCCCTTACATTCTGAAGTGGATAAACCAATATGGTCCTTTGTACTTGTTTTCTACTGGGAATATACAGTGGTTGATGGTGGCAGATATAGAGATTGTAAAAGAAATGATCATGAACACCTCTTTGGTTCTAGGGAAGCCTTCTTATCATTCCAAAGATTTGGGGCCACTCTTAGGCCGTGGTATATTGTCATCAAGTGGGCTAATTTGGGCTCATCAGAGGAAGATAATTGCCCCTGAACTATACCTAGATAAGGTGAAGGAAATGATCCATCTGATAGTTGACTCCACAAAGATAACACTGAGATCTTGGGAGACTAAACTAGAAAGTAAGGGAGCTGTTTCAGAGATTAAAGTTGATGATGATCTGAGAAGCTTGTCAGCTGACATAATTTCCAGAGCTTGTTTTGGGAGCAATTATATTGAAGGAAAAGAAATATTCACAAAGCTTAGAGATCTTCAAAAACTCCTTTCTCATATGTATGCTGGAATTCCAGGCTTAAGTGATGATACTAATATGGAAAATGGTATCATAATTTGTTTCAGATACTTGCCAAACAAAAGAAACAGACAGGTGTGGAAATTAGAGAAAGAGATAAACTCAAAGATATCAAAGCTCATAAAACAACGCATGGAGGAATCTTGTGAGAAGGATCTCTTGCAAATGATACTTGAGGGTGCAAAGAACTATGAGGATAGTGATGGCTTCTTCTCAAATTCCATCTCACGAGACACCTTCATCATAGATAACTGCAAAATTATGTTCTTTGCTGGACATGAGACTACTGCAATTACGTCATCATGGTGCCTAATGCTGTTAGCTATAAACCAAGATTGGCAAGATCGTGTTCGTGCTGAGGTGCTTGAAGTTTGTGGAAATGGTGAAATAGATGCAAACATGCTTAGAGGCATGAAAACGCTAACCATGGTGATTCAAGAGACTTTGAGGCTTTATCCAACAGGAGCATATGTTGTCAGAACAGCTTACGACAATATTAATTTGAAAGGTATCCTAATTCCAAAAGGAATGAATATTCAGATTCCAATTGCAGTGCTGCAACATGACCCTGAGCTTTGGGGGCCTGATGTCCACAAGTTCAATCCACAAAGATTTGCAAATGGGGTGCTTGGTGCCTGCAAGATTCCACAAGCTTTCATGCCATTTGGAATAGGGGCTCGTATCTGTGTTGGACAACATTTAGCAATGATAGAATTGAAGGTGATTTTATCTCTCATTCTGTTGAAGTTTCGGTTCACTCTCTCATCAAGTTACTGCCATTCACCTGCCTTCCATTTGGTTATAGAACCTGGCCAGGGAGTTGTTCTCAATATGACCAGAATTTAA 1620 0.4025 MEMVSTVQVVFGAVLVLLIHVLNVLVLKPRSLRAKLQRQGIHGPSPHFYLGNIPQMKSLLLQSQSTATTQTQDIVKDKDVSLSISHTWPATVFPYILKWINQYGPLYLFSTGNIQWLMVADIEIVKEMIMNTSLVLGKPSYHSKDLGPLLGRGILSSSGLIWAHQRKIIAPELYLDKVKEMIHLIVDSTKITLRSWETKLESKGAVSEIKVDDDLRSLSADIISRACFGSNYIEGKEIFTKLRDLQKLLSHMYAGIPGLSDDTNMENGIIICFRYLPNKRNRQVWKLEKEINSKISKLIKQRMEESCEKDLLQMILEGAKNYEDSDGFFSNSISRDTFIIDNCKIMFFAGHETTAITSSWCLMLLAINQDWQDRVRAEVLEVCGNGEIDANMLRGMKTLTMVIQETLRLYPTGAYVVRTAYDNINLKGILIPKGMNIQIPIAVLQHDPELWGPDVHKFNPQRFANGVLGACKIPQAFMPFGIGARICVGQHLAMIELKVILSLILLKFRFTLSSSYCHSPAFHLVIEPGQGVVLNMTRI. 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10060 539 SUPERFAMILY Cytochrome P450 88 537 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca3g10060 539 PRINTS P450 superfamily signature 349 366 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca3g10060 539 PRINTS P450 superfamily signature 478 487 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca3g10060 539 PRINTS P450 superfamily signature 401 412 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca3g10060 539 PRINTS P450 superfamily signature 487 498 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca3g10060 539 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 480 489 IPR017972 GO:0005506|GO:0016705
Seca3g10060 539 Gene3D Cytochrome P450 30 539 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca3g10060 539 Pfam Cytochrome P450 101 514 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca3g10060 539 PANTHER CYTOCHROME P450 FAMILY MEMBER 17 530 - -
Seca3g10060 539 PRINTS E-class P450 group I signature 477 487 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca3g10060 539 PRINTS E-class P450 group I signature 100 119 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca3g10060 539 PRINTS E-class P450 group I signature 218 236 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca3g10060 539 PRINTS E-class P450 group I signature 487 510 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca3g10060 539 PRINTS E-class P450 group I signature 338 355 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca3g10060 539 PRINTS E-class P450 group I signature 358 384 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10060 Seca-Chr3 244501248 244504718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10060 124 536 Cytochrome P450 AT5G24900 43.198 1.96e-117 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10060 K24544 - gmx:100780335 788.489