Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca3g10057 | ATGGAGGTCAGTCAGCACAGTAAGTTCTTCTGTGAGTTCTGTGGAAAGTATGCTGTTAAGAGGAAGGCTGTTGGTATTTGGGGATGCAAAGATTGTGGCAAAGTGAAAGCTGGAGGTGCTTACACATTGAATACTGCCAGTGCTGTAACTGTGCGAAGCACCATCCGGAGGCTGAGAGAGCAAACCGAGAGTTAA | 195 | 0.4718 | MEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES. | 65 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca3g10057 | 64 | Gene3D | - | 1 | 64 | IPR011331 | GO:0003735|GO:0005840|GO:0006412 | |
| Seca3g10057 | 64 | PANTHER | 60S RIBOSOMAL PROTEIN L37A-2 | 1 | 64 | - | - | |
| Seca3g10057 | 64 | SUPERFAMILY | Zn-binding ribosomal proteins | 1 | 54 | IPR011332 | GO:0006412 | |
| Seca3g10057 | 64 | Pfam | Ribosomal L37ae protein family | 1 | 60 | IPR002674 | GO:0003735|GO:0005840|GO:0006412 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca3g10057 | Seca-Chr3 | 244466435 | 244468109 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca3g10057 | 1 | 64 | Cytoplasmic Ribosomal Protein Gene Family | AT3G10950 | 92.188 | 3.04e-41 | 127 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca3g10057 | K02921 | - | twl:120004279 | 135.191 |